Query= MSMg01no463_h08.b1 MSMg01no463_h08.b1 CHROMAT_FILE:
MSMg01no463_h08.b1 PHD_FILE: MSMg01no463_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:52 2005
(532 letters)
>mm_chr17_67331694_67332624
Length = 931
Score = 721 bits (373), Expect = 0.0
Identities = 482/529 (91%), Gaps = 20/529 (3%)
Strand = Plus / Minus
Query: 4 gaattcaatcatttttcaatgaggttgtctagccatatcctactggagttcacattaact 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaattcaatcattactgaatgaggttgtctagccatatcctactggagttcacattaact 492
Query: 64 aaccagtgtgcttagcctcaagaataatagactctgaggaagaacaagggtagtccttaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaccagtgtgcttagcctcaagaataatagactctgaggaagaacaagggtagtccttaa 432
Query: 124 cgtatgtcaagatgcctctagactgcagaaggaataaaaactactccttgttgccttggg 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 431 cgtatgtcaagatgcctctagactgcagaaggaataaaaactacttcttgttgccttggg 372
Query: 184 agaaagggagttgatttcatgcggctgtggtcaagcattaaggaaaaagaattttccaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agaaagggagttgatttcatgcggctgtggtcaagcattaaggaaaaagaattttccaaa 312
Query: 244 cattagactggcagtgaacagaaactggctgtctgtaggtcatagaaccttctagaagct 303
||||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 311 cattagactggcagtaaacagaaactggctgccgg-aggtcatagaaccttctagaagct 253
Query: 304 tttaagggagacttatggattggatctattgtactaactttcccataatttcttttcttc 363
|||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 252 tttaagggagacttatggattggatctattgtactaactttcccataattcct---cctc 196
Query: 364 tttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 423
|| || || || || || || || || || || || || || || ||
Sbjct: 195 ---ctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcct---------- 149
Query: 424 cttcttcttcttcttcttcttcttcttcttcttccattaagcaaaggcaaggcaagctct 483
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 148 ---cttcttcttcttcttcttcttcttcttctaacattaagcaaaggcaaggcaagctct 92
Query: 484 tggctaaagacttggacctcatgttgggttggttggttgttttttggtt 532
| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 tagctaaagacttggacctcatgttgggttggttggttgttttttggtt 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 931
Length adjustment: 10
Effective length of query: 522
Effective length of database: 921
Effective search space: 480762
Effective search space used: 480762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_h08.g1 MSMg01no463_h08.g1 CHROMAT_FILE:
MSMg01no463_h08.g1 PHD_FILE: MSMg01no463_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:52 2005
(528 letters)
>mm_chr17_67167055_67167982
Length = 928
Score = 824 bits (426), Expect = 0.0
Identities = 495/530 (93%), Gaps = 26/530 (4%)
Strand = Plus / Plus
Query: 1 accatcactgtcatctcctgccgggtgctgctcatcgtctccttcctcttcttggccagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accatcactgtcatctcctgccgggtgctgctcatcgtctccttcctcttcttggccagt 260
Query: 61 ttccttgggacaaagagtttcagttacatg-gg-cgtgcatgcagacagaagacagagtc 118
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 261 ttccttgggacaaagagtttcagtta--tgtggacgtgcatgcagacagaagacagagtc 318
Query: 119 atggcacaggtgctcactggtgttcaggagcgactgcattcgttcttgcaatgatttatg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atggcacaggtgctcactggtgttcaggagcgactgcattcgttcttgcaatgatttatg 378
Query: 179 tgccttacacatgtgaggttccctgtcaggtttcacggagagagaagcgtccactgtctc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgccttacacatgtgaggttccctgtcaggtttcacggagagagaagcgtccactgtctc 438
Query: 239 tgctaacatttgtaagagcagcagcagcagcagcagcagcagcagcagcagcaacaacaa 298
|||||||| | ||| | || ||||||||||||||||||||| |
Sbjct: 439 tgctaaca-----a----cagta--ag----------agcagcagcagcagcaacaacga 477
Query: 299 caacaataagcccaaaataatcagagagtgctttccatacaacaaacgaatcccaaataa 358
|||| | |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 caacgacaagctggaaa-aatcagagagtgctttccatacaacaaacgaatcccaaataa 536
Query: 359 ccagaatcattagatgattctgtcaacatctgttggctgataaactcctagagtcactag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ccagaatcattagatgattctgtcaacatctgttggctgataaactcctagagtcactag 596
Query: 419 cttcttacgaaataactgagacagagtgtcaaagagaagattctaataaatatctgccag 478
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cttcttacgaaataagtgaaacagagtgtcaaagagaagattctaataaatatctgccag 656
Query: 479 gcaaaattggactacgggttctcaatttgtgacagggctccaccccacta 528
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gcaaaattggactacgggttctcaatttgtgacagggctccaccccacta 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
