Query= MSMg01no463_j16.b1 MSMg01no463_j16.b1 CHROMAT_FILE:
MSMg01no463_j16.b1 PHD_FILE: MSMg01no463_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:05 2005
(508 letters)
>mm_chr17_9262260_9263166
Length = 907
Score = 928 bits (480), Expect = 0.0
Identities = 501/508 (98%), Gaps = 1/508 (0%)
Strand = Plus / Minus
Query: 1 catctggaaccttctggaaccacgatccaaaatgcatctttcttcctatagtcaattacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 catctggaaccttctggaaccacgatccaaaatgcatctttcttcctatagtcaattacc 648
Query: 61 aaaggccttttatgttacgtgatatacaactgcctgactcagaagtgaactcctcagaag 120
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 647 aaaggccctttatgttacgtgatatataactgcctgactcagaagtgaactcctcagaag 588
Query: 121 acagtccaaacacttgcttcttttctctggcaagtcgatacctccctgaattttcagact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 acagtccaaacacttgcttcttttctctggcaagtcgatacctccctgaattttcagact 528
Query: 181 tgttttatttaaagggaaataggaaaatatgagtgtaaaagtcattttgataaatgccaa 240
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 527 tgttttatttaaagggaaataggaaaatatgagtgtaaaaatcattttgatacatgccaa 468
Query: 241 tgtgtcctttgataagtttgtattttgaataagctttctgcccacaagaaataacttctc 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgtgtcctttgagaagtttgtattttgaataagctttctgcccacaagaaataacttctc 408
Query: 301 tgtcttgctagagataaaaggtgaaatttgggtgtcaggatttgccagtctacttaagaa 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 407 tgtcttgctagagataaaaggtgaaatttgggtgtcaggttttgccagtctacttaagaa 348
Query: 361 agggaacaacctgaaataacactgacttaacttctcaacctgtaagtggaaacttggggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 347 agggaacaacctgaaataacactgacttaacttctcaacctgtaagtggaaactt-gggg 289
Query: 421 ggggggcattctcatgactatttactctgaagtctgtttctttttattatttatttctaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ggggggcattctcatgactatttactctgaagtctgtttctttttattatttatttctaa 229
Query: 481 agttttcaattccactatcttgcctatg 508
||||||||||||||||||||||||||||
Sbjct: 228 agttttcaattccactatcttgcctatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space: 446706
Effective search space used: 446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_j16.g1 MSMg01no463_j16.g1 CHROMAT_FILE:
MSMg01no463_j16.g1 PHD_FILE: MSMg01no463_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:05 2005
(530 letters)
>mm_chr17_9058982_9059911
Length = 930
Score = 963 bits (498), Expect = 0.0
Identities = 522/530 (98%)
Strand = Plus / Plus
Query: 1 acagtgcacatactgtaactgggtctctcggatggctgatgacaccagccccatggctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtgcacatactgtaactgggtctctcggatggctgatgacaccagccccatggctgc 260
Query: 61 ctttttatacaagctctagaaactcacaattatttgtggtaccacacctgttctgtgctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttttatacaagctctagaaactcacaattatttgtggtaccacacctgttctgtgctg 320
Query: 121 tacccacacctgtgccttctcccatagtggttcctctagaaattaaaaacccacctgctt 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacccacacctgcgccttctcccatagtggttcctctagaaattaaaaacccacctgctt 380
Query: 181 aattttctgatgtaagattcagctcgggcattatttatggaacttgtttctgatccaacc 240
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttcctgatgtaagattcagctcaggcattatttatggaacttgtttctgatccaacc 440
Query: 241 cctctctttttctttttcctgatctccgatgttaggttcagtatcttcagacactcgttg 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctctctgtttctttttcctgatctccgatgttaggttcagtatcttcagacactcgttg 500
Query: 301 agttcagtgtttgggggcttgagatgtgagcccatgctctaccattcttccttcaaccct 360
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 501 agttcagtgtttgggggcttgagatgtgagcccgtgctctaccatccttccttcaaccct 560
Query: 361 tagtgccaaaggaggaaaaaataaaaaactatctaccaattagagaccaggtcttctagt 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagcgccaaaggaggaaaaaataaaaaactatctaccaattagagaccaggtcttctagt 620
Query: 421 agtttggaatacatcagtgaacagacaaacaaaatttctcttcttgcaatcaattccctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtttggaatacatcagtgaacagacaaacaaaatttctcttcttgcaatcaattccctt 680
Query: 481 ctgcaagagaaaccaaaaggaagttaaataataacgaggaaatgaggcac 530
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 ctgcaagagaaaccaaaagaaagttaaataataacgaggaaatgaggcac 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
