Query= MSMg01no463_j20.b1 MSMg01no463_j20.b1 CHROMAT_FILE:
MSMg01no463_j20.b1 PHD_FILE: MSMg01no463_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:06 2005
(631 letters)
>mm_chr17_58494763_58495789
Length = 1027
Score = 1112 bits (575), Expect = 0.0
Identities = 613/631 (97%), Gaps = 11/631 (1%)
Strand = Plus / Plus
Query: 1 gaaaaactgacatctttagtagtttaatgagatctgtgagcacatgacagatcaataagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaaactgacatctttagtagtttaatgagatctgtgagcacatgacagatcaataagt 260
Query: 61 atctcaagtaactcttctgga--tattaggaatatctcatatacatattaagactgtgca 118
||||||||||||||||||||| | |||||||||||||||| | |||||||||||
Sbjct: 261 atctcaagtaactcttctggacct------aatatctcatatacatgtgaagactgtgca 314
Query: 119 ttgttcagagataaggagctggatcagatttgctcacatccgtttgggtttcctttctgt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttgttcagagataaggagctggatcagatttgctcacatccgtttgggtttcctttctgt 374
Query: 179 ttctgtgataaagcaccctgacaaaaagcaacttggtggataattctacatttctacatc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttctgtgataaagcaccctgacaaaaagcaacttggtggataattctacatttctacatc 434
Query: 239 acagcccatcattgctgagacatcatggagacaggtgagggaaacatccattcacattgt 298
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 acagcccatcattgcagagacatcatggagacaggtgagggaaacatccattcacattgt 494
Query: 299 atatacagtcaagagaagagaaaaataaatgggtgcaggcctgcatgtttcattgcttgc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atatacagtcaagagaagagaaaaataaatgggtgcaggcctgcatgtttcattgcttgc 554
Query: 359 ttgctttgtcctctcctgtagatacagctcagaatcacttgtctaagaaatagtgtcatt 418
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttgctttgtcttctcctgtagatacagctcagaatcacttgtctaagaaatagtgtcatt 614
Query: 419 ccaagtgagctgggtactcctccattaatcaaaaataatgatagtgcactagagatgtgc 478
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 615 ccaagtgagctgggtactcctccattaatcaaaaataaagatagtgcactagagatgtgc 674
Query: 479 ccagaggataaggttatataaacaattcttcagataaagctctctttaaatctttttgca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ccagaggataaggttatataaacaattcttcagataaagctctctttaaatctttttgca 734
Query: 539 cagttgaatcccaatatccatcaagtcagaagttaaactcttaatctcatcatttagcat 598
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 735 cagttgaatctcaatatccatcaagtcagaagttaaactcttaatttcatcatttagcat 794
Query: 599 agtttcctcattcaagaaagctccctcttct 629
||||||||||||||||||||| |||||||
Sbjct: 795 agtttcctcattcaagaaagc---ctcttct 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1027
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1017
Effective search space: 631557
Effective search space used: 631557
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_j20.g1 MSMg01no463_j20.g1 CHROMAT_FILE:
MSMg01no463_j20.g1 PHD_FILE: MSMg01no463_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:06 2005
(527 letters)
>mm_chr17_58643198_58644124
Length = 927
Score = 572 bits (296), Expect = e-167
Identities = 338/352 (96%), Gaps = 2/352 (0%)
Strand = Plus / Minus
Query: 1 catgtctctactcaccaagagaaattcaaagttctgaaactttgtataaaacatgaacat 60
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 358 catgtctctactcaccaagagaaattcaaagttctgaaacttcatatacaacatgaacat 299
Query: 61 ctttttatatctacatggcacaaggcttacacactaatatacttttattattatctgaat 120
||||||||||| ||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 298 ctttttatatccacatggcacaaggattacacacaaatatacttttgttattatctgaat 239
Query: 121 attggataggatgtatcaatttttaaaattttctttattgaagcct-ccccagcctgaag 179
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 238 attggataggatgtttcaatttttaaaattttctttattgtagcctcccccagcctgaag 179
Query: 180 c-ggctggtgcagaccttgtcctcactgaggtggggccaactgtggtgcagctttccgac 238
| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 178 cgggcttgtgcagaccttgtcctcactgaggtggggccacctgcggtgcagctttccgac 119
Query: 239 ttggctggcttcttttgaagtgtcaactgccctgctcttctccaagatgccgctacctgc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ttggctggcttcttttgaagtgtcaactgccctgctcttctccaagatgccgctacctgc 59
Query: 299 agagaggctgaacctgtcttcctgagacattcctgtataaataacagcctgg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 agagaggctgaacctgtcttcctgagacattcctgtataaataacagcctgg 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
