BAC Information

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BAC

Clone NameMSMg01-463M10
Chromosome17 (Build37)
Map Location 36,831,947 - 36,832,326
singlet/doubletsinglet
Overlap genenone
Upstream geneDdr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1
Downstream geneLOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463M10.T7 (MSMg01no463_m10.b1)MSMg01-463M10.TJ (MSMg01no463_m10.g1)
ACCAG548348AG548349
length7431,226
length of high quality
(start - end)
380 (78 - 457)---
definitionCHROMAT_FILE: MSMg01no463_m10.b1 PHD_FILE: MSMg01no463_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:19 2005CHROMAT_FILE: MSMg01no463_m10.g1 PHD_FILE: MSMg01no463_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXATGCGACAACATCC
GCGGAATCTCAGCGCTGCCACAGACCAGGCTCTCCTCCCACCTCACCATA
CCATGCTCTACAAAACATATCCTGTTCCTTTTTTATAAAATACAACTCTC
CTCTTGGCACATCTGTGTTCCCATGGGCGCCATTTAAAAGTCTGATCTTA
CCTTGATTCCATAGTTTGAGTCTGTGGCCTGGGGAAGCTTCCATGGCTCT
ATATCTGTTGCATGTTAGGGTGGGAAACAGGAGGCAATGGTCAGGCAGGA
TTAGAAAGATATGTGTGCCTTAGTTTTTCCCTCCCTGCTGAGTCCAAGGG
CTGTGGGTCCCAATGTGTCAGATTTCATGTTTTTGCCAAAGACTTAGAAG
TACGATTTATGTGTAGAGGAGCATTTGGTACTTGTCCTACAAATATTAGC
TCAAAGCACAGAGCTCACCTTCACTTGAGGCCATGCTAAATTCTTTGGTC
CACAGTATCCTGACCTGTTCTTTTACCCATACTCTCTATAATATTTACCT
ACTGCTTGCTTCCCCAGTATGAACACTCCCCTAGATTGGTCTTCAGATTG
AAGCTGCTTGTAGCACTCTGAAAAGTTTTATGCGGCACCATTTCCAAACT
TTATGTAATATTCCCTCCCCAATCCTAACTAGAACTTGGTGATACTTCCG
AATTCCGCTCTTCAGTGGGATAAACTGCTAACATTCCTATCTG
GCTGGGGGGGTNGAAATAAGTTATAAGATATATATGTAAAGGAGATGCGC
TACTCTTCCACTGTCAGGGCGAGAAGCCACAGTGAGAGGTTTCTCCGTTC
CGCACTTGCGTTGCGCTTGTCGTGAGTTGTTGCGCGGAGTCGGGTCGGGG
TGGCGTGTTTGTCACTTCGAGTCGCGTGCCCCTGGGAGTATTACCGTAGT
ATTGGTGTATATACTTGATGGAGATTTTTTCGGTACTTGTTATAGTTTGG
TAGGTTTAGATTTTTGGGAATGTCTCGTCCCGTGAGCCAAATATGTCCTG
TCCTCCGTCTGTCAACCTGCCTATTGAGTATGGGCGAGTGCTGGTATTTT
CGAACACATTGTCATACTCTCGTCTTCATTAACAATATTTAATTAATTTC
TTCTATTTGACATGTGGCGTCATCCATCTGTTTCACACATTAGTTGCTGT
ATATGTTATAAAAGATGATGTTCCTTTCGCTGTCTATGACCTGATCATGT
GGCTGTGTGTTGCTTGTTGAGTATAGTGAACTCCTATCGTCGCGGGTGTC
CCCTACTTTGTCGTATACATGTCACCATCAATAATTTATTACCATTACAT
TCAGTCCGTAATTTGTTATTGTTTAACATCTTCGGTGTGTCTGTGTCATT
GCGTTCAATAGACCATTGATGACACCGTTACAATGATTACCGTGAATATT
ATCTCCATACTGCACGTACCTTGCCTCCTACACTTCTGCCGCTGCTGTTA
TCTCAAGATCGTGTCATTTTGCTTACATTTGGCATACTCGGATTATCTTG
TATTGTCTTCTTTCATATGTATTCAATATATTCGATACCCCTAACATTTG
ACTACTAGATTCACTATTATTCTTGACGGTCTCTTATTCATTCATCACTG
GGTGCAATTCGTAGTATGTTCGTAGTGGCGACGTGTGTTCTATAGCGTGA
TAGTGACATATGTATATGTTATATGTGAGATATGATACAATACACGACAC
ACAACCCCATATGTATGTTGTCTAGCAACGTGTGCTACGTGGACCAGGAT
TTGTATCTTCTCGGGTTCATCTCTGTCTTTTCCAGTTTGTTTTCACATCT
TTATATCTAGTTGATAGCTCGATTACTGGTCCTGTTTCGAGCGCATACTT
ACTATCTCGCGTGCGCATTATGCCAATGCGTTCAGTATGTTATTGTGAGG
TGTCGCGCATTATCTACGGGATCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_m10.b1 MSMg01no463_m10.b1 CHROMAT_FILE:
MSMg01no463_m10.b1 PHD_FILE: MSMg01no463_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:19 2005
         (380 letters)



>mm_chr17_36831747_36832526
          Length = 780

 Score =  704 bits (364), Expect = 0.0
 Identities = 376/380 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctctcctcccacctcaccataccatgctctacaaaacatatcctgttccttttttata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ggctctcctcccacctcaccataccatgctctacaaaacatatcctgttccttttttata 521

                                                                       
Query: 61  aaatacaactctcctcttggcacatctgtgttcccatgggcgccatttaaaagtctgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aaatacaactctcctcttggcacatctgtgttcccatgggcgccatttaaaagtctgatc 461

                                                                       
Query: 121 ttaccttgattccatagtttgagtctgtggcctggggaagcttccatggctctatatctg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 460 ttaccttgattccatagtttgagtctgtggcctggggaagcttccatggctctatagctg 401

                                                                       
Query: 181 ttgcatgttagggtgggaaacaggaggcaatggtcaggcaggattagaaagatatgtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttgcatgttagggtgggaaacaggaggcaatggtcaggcaggattagaaagatatgtgtg 341

                                                                       
Query: 241 ccttagtttttccctccctgctgagtccaagggctgtgggtcccaatgtgtcagatttca 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cctgagtttttccctccctgctgagtccaagggctgtgggtcccaatgtgtcagatttca 281

                                                                       
Query: 301 tgtttttgccaaagacttagaagtacgatttatgtgtagaggagcatttggtacttgtcc 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 280 tgtttttgccaaagacttagaagtaggatttatgtgtagaggagcatttgggacttgtcc 221

                               
Query: 361 tacaaatattagctcaaagc 380
           ||||||||||||||||||||
Sbjct: 220 tacaaatattagctcaaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)