Query= MSMg01no464_h15.b1 MSMg01no464_h15.b1 CHROMAT_FILE:
MSMg01no464_h15.b1 PHD_FILE: MSMg01no464_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:16 2005
(257 letters)
>mm_chr17_61104262_61104918
Length = 657
Score = 435 bits (225), Expect = e-126
Identities = 248/256 (96%)
Strand = Plus / Minus
Query: 2 ttctcaactggntgaccagcatccttcggtcgctgcctcccctacgctgagacctcatgt 61
||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 457 ttctcaactggctgaccagcatcctccggtcgctgcctcccctatgctgagacctcatgt 398
Query: 62 gtctaacattaggcgtatcattgatatctgagttctgaaggtcaagtcaaaaggatttct 121
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 397 gtctaacattaggcgtatcattgatatctgagttctgaaggtcaagtcagaaggatttct 338
Query: 122 tcagaatctgagggtgagttcagaaggcgatgatgtcacaaggaaacccagcatcacccc 181
|||||||||||||||||||||||||||| |||| ||| |||||||||||| |||||||||
Sbjct: 337 tcagaatctgagggtgagttcagaaggccatgacgtcgcaaggaaacccaacatcacccc 278
Query: 182 ctttcatcaaaaaatagtttatctttctgtggcattggactttttaaaatttgctgtcca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctttcatcaaaaaatagtttatctttctgtggcattggactttttaaaatttgctgtcca 218
Query: 242 aacatgatatactttt 257
||||||||||||||||
Sbjct: 217 aacatgatatactttt 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space: 160704
Effective search space used: 160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no464_h15.g1 MSMg01no464_h15.g1 CHROMAT_FILE:
MSMg01no464_h15.g1 PHD_FILE: MSMg01no464_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:16 2005
(521 letters)
>mm_chr17_60909400_60910322
Length = 923
Score = 890 bits (460), Expect = 0.0
Identities = 507/523 (96%), Gaps = 3/523 (0%)
Strand = Plus / Plus
Query: 1 actcttg-aaatatacttgacttactcaatcttttanatgacaccaccctcttcatgttt 59
||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 201 actcttgaaaatatacttgacttactcaatcttttaaatgacaccaccctctttatgttt 260
Query: 60 aacagtaaatgttcctagctctgcttcagtaatgtttcaaaacatttaaaatgtgtctta 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagtaaatgttcctagttctgcttcagtaatgtttcaaaacatttaaaatgtgtctta 320
Query: 120 atctt-aaaaatgttgcatttcgatataaatggttatccttccaatgttgcctgaacgta 178
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 321 atcttaaaaaatgttgcattttgatataaatggttatccttccaatgttgcctgaacatg 380
Query: 179 tgtgcagaacagatctacatggaatttttacaaacttattcagaaattcatggaggaaat 238
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tgtgcagaacagatctacatggaatttttacaaacttattcagacattcatggaggaaat 440
Query: 239 aaaagttctacattcaagcattcacatcagaactaaatattgaaaacctggtaacaaatg 298
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagcaccacattcaagcattcacatcagaactaaatattgaaaacctggtaacaaatg 500
Query: 299 ttcatgagtaaacatgggatacccatgagtcagggaaaaatattaagataattttctgag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcatgagtaaacatgggatacccatgagtcagggaaaaatattaagataattttctgag 560
Query: 359 agactttaaatttgtgggggtggtggctgaaaatgtttgcaaaagtttattatttttatt 418
||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 agactttaattttgtgggggcggtggttgaaaatgtttgcaaaagtttattatttttatt 620
Query: 419 tgatttttttcattttagaaaatttatattctgcgtatgatgaaatatatacatatctat 478
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgatttttt-cattttagaaaatttatattctgcgtatgatgaaatatatacatatctat 679
Query: 479 tatagttccctaccaactttttaccatatatccttctatcaca 521
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tatagttccctaccaactttttaccatatatccttctatcaca 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 923
Length adjustment: 10
Effective length of query: 511
Effective length of database: 913
Effective search space: 466543
Effective search space used: 466543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
