BAC Information

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BAC

Clone NameMSMg01-464J13
Chromosome17 (Build37)
Map Location 37,225,952 - 37,226,106
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90
Downstream geneOlfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464J13.T7 (MSMg01no464_j13.b1)MSMg01-464J13.TJ (MSMg01no464_j13.g1)
ACCAG548974AG548975
length7211,379
length of high quality
(start - end)
155 (88 - 242)---
definitionCHROMAT_FILE: MSMg01no464_j13.b1 PHD_FILE: MSMg01no464_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:25 2005CHROMAT_FILE: MSMg01no464_j13.g1 PHD_FILE: MSMg01no464_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTAAACTAAATTTGCGGCGNNAAAAGAATACATTTCATACAGATCCGNGG
AANNCCTCTTTACTAAATACCTCTGGGNNAGGAGANGATTAGAATCACAT
GGCTGAAGTAATGGGGTCCACCATCCTTTACATCCTGCTTATCATTTTAC
ACTGTGATAATCTTCTGGATTACAACACTGTTCTGCCTCTGTGGAGAGAG
TGTAGATTTGCATGTTTACCACTGCTATGGCTGTCACTCAACATTTTTTA
GAACCAATGTAGGATTCTGCCAACTACCAAATATACACAGTCAGAGCATA
ACCATTTGATTTGGTCNTTTGGAACCTATGTTCTCATTATGATTCATCAG
ATGATTTTTACACAAATATCTCAAGAGATCTACAAACCTAGGATTTGAAC
ATCTGTATTATTATTACAATATAGAATATTTCAAAGGAATTAAGCATAAA
GGGAAGAATTTGAGAAGTGTTAACGGTATAGTCCTATATGGATATATGAA
AGAACTAAGAAGATGTCTGGATGGTGGGTGAAGAAGAGCAGATGTGACAT
TGGTTATTCCAAATACTATCTTATTGATAGAAAGGTATTGGCTGAACTAT
TGACCTACTCCAGTGGGTACTATTGCTGGCATGTTTTCTCTTTATTCTCA
TGTCCCTTTACCATAATTACCAGCTAATTAACTGTCTATGGGCTGAGGAC
CCCTTGGTACTCACCTGAATC
ATAGATATTGAGTCACGGCTGTGCTGGTGTGGTTGTAGTGCGGCGTGCGG
AAGCTCTCCGCACCGACGAAGAGTGGGCGCGGACCTATGCTTGCCGATGT
GCTATTCCTCTACTGAAACTATTCTACCTTCGATCGTTCCGCGCATCAGG
TGTTACGCTCGCATTGTGGTGATTGTCGTTCCTGATGCGATTTCTTACTG
CCTCTAGCTGAGCGTTGGGGCGGTACGAGCGGTATGGCACGAGACGAATG
GGTATATTAATGTCTGCGGCCTGTTATGATCTACTGGTGTACCACCCGCC
GCCATCCCTTTCTCCGCGTCATTCTTCATTATCATTAACACGTTCCGCGC
GGTCGGGCGTCGGCCCGCATGTGTCGGTAATATCTGCTCGCGTGTCGTGC
CGCCTGTGTACGGGTTGTCTTGCATGCTTACTGAATATATTGTGCGCTGT
GTGAGGAGGTACAGACGGTAACAATGGAACGACGCGTCATAGAACGCGCG
GTGGCGCAATGGTGGGCCGACATAGGGACGCAGAGCACTATGTGTGCGTG
CACGAAAATCGACCGCATAGATAAGTGTGCCGGCATCCGAGATCGAACGA
CCAATCAGCAGAAGGAGGCAATGCGTACGATCAGAGCGATGTGTTAGGGA
ATTGATACACATGACCATGTTGGCAGTGCGTCAGTGTTTTACATATCGTG
TGCAGATGATTTCACGCACCAAGAATAAAAGAAATATTATGATGATATAA
CGCGCAGTGCGCGAAGATATGCGTGGGCGGACAGATGATGCATACGGCGG
TGCGCGTGCACAACGTATATGCATGCTACGACGAATGACTGTCGTCATGT
CAAATGCTCGCAGACGTCTATGTACATTCTTTATCGGCGGAGAGTGTATT
ATCGTTTATTATGATCGTGANGTACATCACGGCAGNAGCGTGTCACTCAC
TCGTGCTGCGGATTGTACCGGGCGAGTCGCACCGCGCTGTTATGTTATTG
TAAGAAGTCGCATCCGTATTCCGGCTACANATACACGTGATTCGCTATAT
TACCGATATAAGCCTCATACGTGTAATCGCGTCCGCTACCGCATACCGAC
GCAGTCCNTGCGACGTAGCGTGCTGTTGTCGTCCATAGAGTGGACGCCAT
GTACTTAGGCGCGACTCTACATCCGATCTATCTCGTCGTTGTTCGAGTGA
CGAGCTATCGACAGCGGCCTGATTTNGTATATTATATGCTCCTACCGTGA
TAGCGTAGTGAGCGCGCTGTCGATGGTTGTGGACGCGATCTGGTGTAGCG
TACTATATAACTCACTCTCTGACTATAGTGTTTCGTCNCACTCGCTAGGT
ACACCACTANTCATNACCTCAGCGACATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_j13.b1 MSMg01no464_j13.b1 CHROMAT_FILE:
MSMg01no464_j13.b1 PHD_FILE: MSMg01no464_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:25 2005
         (155 letters)



>mm_chr17_37225752_37226306
          Length = 555

 Score =  292 bits (151), Expect = 6e-84
 Identities = 154/155 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attagaatcacatggctgaagtaatggggtccaccatcctttacatcctgcttatcattt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 355 attagaatcacatggctgaagtaatggggtcaaccatcctttacatcctgcttatcattt 296

                                                                       
Query: 61  tacactgtgataatcttctggattacaacactgttctgcctctgtggagagagtgtagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tacactgtgataatcttctggattacaacactgttctgcctctgtggagagagtgtagat 236

                                              
Query: 121 ttgcatgtttaccactgctatggctgtcactcaac 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 ttgcatgtttaccactgctatggctgtcactcaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)