BAC Information

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BAC

Clone NameMSMg01-464N13
Chromosome17 (Build37)
Map Location 16,376,900 - 16,377,214
singlet/doubletsinglet
Overlap genenone
Upstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464N13.T7 (MSMg01no464_n13.b1)MSMg01-464N13.TJ (MSMg01no464_n13.g1)
ACCAG549165AG549166
length744826
length of high quality
(start - end)
320 (320 - 639)238 (76 - 313)
definitionCHROMAT_FILE: MSMg01no464_n13.b1 PHD_FILE: MSMg01no464_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:44 2005CHROMAT_FILE: MSMg01no464_n13.g1 PHD_FILE: MSMg01no464_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCTATAATTGCGGCGCTAAACGAATCACTATTTCAGACCATCCGCGGAA
NNCCCTAGATTTCAGAACAATGACAGNTATGAAGCCCATAAACATACACG
CTGAGCATGCTCTGTACGCTGTATTTATATAAGTATTTATTTATAGGTAT
ATGGAGCAACAATGGTTAAAGAAGAGCAGACCATGAATTAGAAAGGCAGT
AAGGAAGGGTAAGAGGGAAATAGGGATACGGGAAATGATGTAATTATATT
TTCATTACACTTAATAAAAGAAAGTGGTTATAATAGACTCTTCATTTTTA
AATCTCGAAACATTCTGATATGCCTAATTGTTTTCCTTTAAATCTTTCCC
ACTATTGTTTCCACTATAGTTCCCACTCTAGTTTCCCTGAAAAAATAATT
AAAATATACTTATAAGTATACTCTAATAGAATAAGGAAAAGCTAAGAGAA
AGAACAAGAAGGGGAGAGGAGAGGAGAAGAGAGGAGAAGAAGAGAAGAGA
GGAGAGGAGATAGCTCAATGTTCTTCATTGATTTTTTTTTTTGTTGTTGT
TGTTGTTGTTTCTTTGCTTGTTTGTTTTTGGCGAGACAGGATCTTTACAT
AGCACTGGCTGTCTTGGAACTCATTATGTGGAATATGATGTTTTTTGTTT
CTCTACAGNCCTGTCTATCTGCAGAGTAATTGGATTACCGATGGGCTCGA
CCATGCCAAACCAGGTTATTTCACTGATTTTCTTTTCTTTTCTT
ACGATGATGNTGGTAGGCCTGGNGGCCGCCTGGTTCAAAAATGGAGGTGA
CACTATAGAATGACAAAAGGAATTCCATAGAGCAAAGTTAAGAGACTTTT
GAAGCTAAGATATAGCTTATTTTCTCTGGAAAAAAGTCTAGTACCCAAGG
AGCTAAAGGGGTCTATAACCCTATAGGTGGAACAACAATATGAACTAACC
AGTACCCCCAGAGCTCGTATCTCTAGCTGCATATGTAGCAGAAGATGGTC
TAGTCAGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGTAAACTTTATA
TGTCCCAGTACATTGGTAATATAGGGCCAAAAAGTGGGAGTGGGTGGGTA
GGGGAGTAGGGCAGGCGTGAGGCTTCTTCCTCTTTTTTTTACCCTTTTTT
TTTTTATCTGTCCGCCCCCCCCTTAATGTTGTCCTTTGAACATAATTTCT
CTCCTCATACCCTCCATCTACTTTTTCTACCTTTCTACTATTCATTCTTC
TTTTTCATTTTTCCCCCTTTTTATTTTGTCTCTTATTTTCTCCCCTCTCT
TCTTCCTTCTCCTTTTACTCTCACCCTCTTCTTTTTTTTTACCTTCTTTC
CTTCATTCTTTTCGTCTGTCATTCCTACTCCGTTCTCTTGTTCCTCCTCT
CTCTTTTTCTCCTATTCTTTACTAATTACACTTTTTTTTTTTTTTTTGTC
TCACATTGTTGTATCCTTCAACGCCTTTTTTTTTATATCCCCTATCCCTT
ATTCTCACTCTGACCCCATTCTTATTCCTATACCTTCATTTATCTTTTCC
ATTCGTTTATCTTGCTTTATGTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_n13.b1 MSMg01no464_n13.b1 CHROMAT_FILE:
MSMg01no464_n13.b1 PHD_FILE: MSMg01no464_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:44 2005
         (320 letters)



>mm_chr17_16376878_16377597
          Length = 720

 Score =  580 bits (300), Expect = e-170
 Identities = 313/320 (97%), Gaps = 5/320 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcctaattgttttcctttaaatctttcccactattgtttccactatagttcccactct 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 337 atgcctaattgttttcctttaaatctttcccactatagtttccactatagttcccactct 278

                                                                       
Query: 61  agtttccctgaaaaaataattaaaatatacttataagtatactctaatagaataaggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agtttccctgaaaaaataattaaaatatacttataagtatactctaatagaataaggaaa 218

                                                                       
Query: 121 agctaagagaaagaacaagaaggggagaggagaggagaagagaggagaagaagagaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 agctaagagaaagaacaagaaggggagaggagaggagaagagaggagaagaagagaagag 158

                                                                       
Query: 181 aggagaggagatagctcaatgttcttcattgatttttttttttgttgttgttgttgttgt 240
           |||||||||||||||||||||||||||||||||||||||     ||||||||||||||||
Sbjct: 157 aggagaggagatagctcaatgttcttcattgattttttt-----ttgttgttgttgttgt 103

                                                                       
Query: 241 ttctttgcttgtttgtttttggcgagacaggatctttacatagcactggctgtcttggaa 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 102 ttctttgcttgtttgtttttggtgagacaggatctttacatagcactggctgtcttggaa 43

                               
Query: 301 ctcattatgtggaatatgat 320
           ||||||||||||||||||||
Sbjct: 42  ctcattatgtggaatatgat 23


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)