Query= MSMg01no464_n21.b1 MSMg01no464_n21.b1 CHROMAT_FILE:
MSMg01no464_n21.b1 PHD_FILE: MSMg01no464_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:46 2005
(535 letters)
>mm_chr17_14681519_14682454
Length = 936
Score = 969 bits (501), Expect = 0.0
Identities = 527/541 (97%), Gaps = 11/541 (2%)
Strand = Plus / Minus
Query: 1 ggtctaagagcatgagaattatggatgtgtgctactataccaggctttacatgagttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ggtctaagagcatgagaattatggatgtgtgctactataccaggctttacatgagttctg 811
Query: 61 ggcatgagcatttaaattccagttctcgggctcatgtagaaagcactatatcgcctgagc 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 810 ggcatgagcatttaaattccagttctcggggtcatgtagaaagcactatatcgcctgagc 751
Query: 121 cacctccacagctctataaagtgttgtcaatggcttcttctctgcttttatttcctgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 cacctccacagctctataaagtgttgtcaatggcttcttctctgcttttatttcctgact 691
Query: 181 ataatgagggttgcaggcagggatctccagtgcacaagccaagggctcttgcactgagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ataatgagggttgcaggcagggatctccagtgcacaagccaagggctcttgcactgagct 631
Query: 241 acagccctttttt-----cagttttattttaattgagttgtaacaacactcatagagagg 295
||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 acagccc-----taggcacagttttattttaattgagttgtaacaacactcatagagagg 576
Query: 296 caagaaggtaaagggtagaaatcttcagaaacccacttcactatccagtgatcca-gatt 354
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 575 caagaaggtaaagggtagaaatcttcagaaacccacttcactatccagtgatgcaggatt 516
Query: 355 tgcagattgtccttgtccggtattcagctttgcactctcccagctgcatcttctgtgatg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgcagattgtccttgtccggtattcagctttgcactctcccagctgcatcttctgtgatg 456
Query: 415 caaagtctctggctttattaaactcaaatttattattttcatctttcatgaatcataagt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 caaagtctctggctttattaaactcaaatttattattttcatctttcatgaatcataagt 396
Query: 475 ttcctgctgaatctggtaacatacctcattctgtctgcacagctgtgattcacgttttta 534
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 395 ttcctgctgaatctggtaacatacctcattctgtctacacagctgtgattcacgttttta 336
Query: 535 g 535
|
Sbjct: 335 g 335
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space: 486150
Effective search space used: 486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no464_n21.g1 MSMg01no464_n21.g1 CHROMAT_FILE:
MSMg01no464_n21.g1 PHD_FILE: MSMg01no464_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:46 2005
(247 letters)
>mm_chr17_14506050_14506696
Length = 647
Score = 470 bits (243), Expect = e-137
Identities = 246/247 (99%)
Strand = Plus / Plus
Query: 1 tgtcctctgttctctgtgctcctgctgcttaagaagagttgttttggccataagagggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcctctgttctctgtgctcctgctgcttaagaagagttgttttggccataagagggaa 260
Query: 61 agcttattgttatcagtcaagggccatcaagtatgaagcagagaaggggtcaactctagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcttattgttatcagtcaagggccatcaagtatgaagcagagaaggggtcaactctagg 320
Query: 121 aacgaatatttggaccccttcttgctgctggctttggccagagaggttaaatatttaaga 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacgaatatttggaccacttcttgctgctggctttggccagagaggttaaatatttaaga 380
Query: 181 agccaaggaagctagatgcctcaaatagctttctatagaatgtaaatatttgtatctaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccaaggaagctagatgcctcaaatagctttctatagaatgtaaatatttgtatctaga 440
Query: 241 aaatgtc 247
|||||||
Sbjct: 441 aaatgtc 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
