Query= MSMg01no465_c24.b1 MSMg01no465_c24.b1 CHROMAT_FILE:
MSMg01no465_c24.b1 PHD_FILE: MSMg01no465_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:12 2005
(407 letters)
>mm_chr17_71335303_71336108
Length = 806
Score = 663 bits (343), Expect = 0.0
Identities = 381/407 (93%), Gaps = 21/407 (5%)
Strand = Plus / Plus
Query: 1 tctttgnttcaggcttagcgccacagagttcaaagggaccataagtcaggtgcctgggga 60
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tctttgtttcaggcttagcgccacagagttcaaagggaccacaagtcaggtgcctgggga 260
Query: 61 attttctatttctggtaaaacaacaaaaaaaataagtgaccgtaatagaactccacccct 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 attttctatttctggtaaaacaacaaaaaaa-taagtgaccgtaatagaactccacccct 319
Query: 121 gttcggtaagctctctcagaggagtaccaccattccatctcacattcctttaccgctctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttcggtaagctctctcagaggagtaccaccattccatctcacattcctttaccgctctg 379
Query: 181 caggtttttcttgctttctaatgactgcttccttcaaagttctacccttggacttgctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caggtttttcttgctttctaatgactgcttccttcaaagttctacccttggacttgctta 439
Query: 241 attgctggttgaaaaacctgtatctcgaaagtaccactcaagctgggtgtgggtctctcc 300
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 attgctggttgaaaaacctgtatct--------------------ggtgtgggtctctcc 479
Query: 301 aagtcgaggcaagaggattgccgcaagttcgaggctaagtacacagttaagtcccaggcc 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aggtcgaggcaagaggattgccgcaagttcgaggctaagtacacagttaagtcccaggcc 539
Query: 361 agcctggttacagagtgaggttttgtctcanacaaacaaacaaacaa 407
|||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 540 agcctggttacagagtgaggttttgtctcaaaaaaacaaacaaacaa 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 806
Length adjustment: 9
Effective length of query: 398
Effective length of database: 797
Effective search space: 317206
Effective search space used: 317206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no465_c24.g1 MSMg01no465_c24.g1 CHROMAT_FILE:
MSMg01no465_c24.g1 PHD_FILE: MSMg01no465_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:12 2005
(461 letters)
>mm_chr17_71529999_71530859
Length = 861
Score = 808 bits (418), Expect = 0.0
Identities = 442/450 (98%)
Strand = Plus / Minus
Query: 1 tttggaactatgctgaggagtggtctagccctgccctcagatgatggactatttctgaag 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 450 tttggaactatgctgaggagtggtctagccctgccctcagatgatgaactatttctgaag 391
Query: 61 attctggaaactttaagagatgagactaaactcgaggaagaaagttactgtagcgcgtgg 120
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 390 attctggaaactttaggagatgagactaaactcgaggaagtaagttactgtagcgcgtgg 331
Query: 121 agacatgtcacctctgactgcttcctgtcttgctttctgtttcctcccatacatgaagac 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 330 agacatgtcacctctgactgcttcctgtcttgctttctgtttccttccatacatgaagac 271
Query: 181 ctgggtttactctccaggatccagatgaagatgccacacatgcttacactagattataat 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 270 ctgggtttactctccaggatccagatgaagatgccacacatgtttacactagattataat 211
Query: 241 ccccagggtcttatttatactcagtctgcagtccaaccagcccaacaatgggcaactgtg 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ccccagggtcttagttatactcagtctgcagtccaaccagcccaacaatgggcaactgtg 151
Query: 301 attgggaagtcaagagtctaggagttgctcagtcccacgagggtcgctgtttcggctggt 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 150 attgggaagtcaagagtctaggagttgctcagtcccacaagggtcgctgtttcagctggt 91
Query: 361 cttctgtatgagctggaagactgaagaaatagattcccacagatgtgctgacaagtaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 cttctgtatgagctggaagactgaagaaatagattcccacagatgtgctgacaagtaagc 31
Query: 421 ctaagcaggagaaggaggagaaaggggagt 450
||||||||||||||||||||||||||||||
Sbjct: 30 ctaagcaggagaaggaggagaaaggggagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
