BAC Information

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BAC

Clone NameMSMg01-465G05
Chromosome17 (Build37)
Map Location 75,430,923 - 75,431,330
singlet/doubletsinglet
Overlap geneLtbp1
Upstream geneMemo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672
Downstream geneEG621988, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465G05.T7 (MSMg01no465_g05.b1)MSMg01-465G05.TJ (MSMg01no465_g05.g1)
ACCAG549580AG549581
length744767
length of high quality
(start - end)
402 (64 - 465)408 (71 - 478)
definitionCHROMAT_FILE: MSMg01no465_g05.b1 PHD_FILE: MSMg01no465_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:28 2005CHROMAT_FILE: MSMg01no465_g05.g1 PHD_FILE: MSMg01no465_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTATACGATCACAATCCATACCGGATCCGCGGAATTCTC
AATTTCCAAAAACTGACCTCAAACTCACAGAGCTCCACTGCCTCTGCCTC
TCTGCCTCTGCCCCTCTGCCCCTCTGCCCCTCTGCCCCTCTGCCTCTGCC
ACTGCCACTGCCTCTGCCTCTGCCACTGCCACTGCCACTGCCACTGTCAC
TGAAGTGCTGGAATTAAAGGTTTAAAGTCACCATGCTCTTTCTATAATAA
ATATATTCTGTAGTGGTTTCTTTGATAAGTTTCCAGGCATTCTACATTGC
CCATAAGATAGATACTCATTTTCTTTTACCGTTGTAATGAATCGCCTCTA
AAACCCACAAGGTATCCTCCATAAAATTTATTGGGAAGAAAATACAGTCT
CCAGCTAATCAGAATGACCCCAAGGCATTTTCATGGATGAGCCTCGGGAG
GCCAACACAATTCAGCTGGCAGAGAACGAATGGTTCTATATTCTAACAAA
GCTTCAAAAAAAAATGTTTCTTCACCCTGATCTGTTATGCCCCATTATTT
AACACTTCCCCGAGAGCCATCTTCTTCCACAGGAAAACTAATTTCTAATA
AAGATGGTAAAGATTCCCAAACAAAACACGTAAACTAATTTTTTTTTTTT
TTTCTAATATCCCCCCCCCTACAAAAACGCCCCTCTAAAAAAAACTTTGT
CCCCCCACTGCAAAATGTGACCAGAACTTCTTTCCCAAAAAAAA
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAAAATAATGTCACAATTTTTGTCCTACAT
TCAGACCAAGTGGCCCTTCAAGGAAAGTGTCTGAATTGAAACTATGACAT
TGGAATATTGCCATGATTGAGTTTCTTCTTGATTCCTAGGTTCTCCTCTC
AGATCCACGTTGAAGGATAACTTCAAAAGAGAGGGTACAATCCCGACTCA
TATGGGTATAAAATGAACATGTGCCAGAGATTTGATTAGCATGTGTTTAA
ATGTGGGAACCATATATATGCCAGAACTGGTTCAAAGAAATGGTGGGGCA
GATTTAGACATAAATGCAAAATGGGTCAACCCACAGGGTAGCAACCACTT
GGATTTCCTAGAAACCACTGGTTTGCATTTTTATGATCATGAATCATTTG
CAATATTATCGGTTTTCTATAATTGACAGGGTCTTATATATTGCCTGCAC
GCTTTGATAGGCAGCTATAAACTATCAGGGTTCTTTCTCACTGATAGTAA
ATTTTTTTTGGATACCCATGTTTAGTTTCTTAATAACTTCTTGTTCTGTG
TCTGTGTATTCTCCCGAACCTTGAATCTATCTCCCTCTTCGCTACTATAT
CGTTTTTTTCTTGTTTCATGTTTTCCCCTCCCCTCCCCTATACCCCCTAC
ACTTCTTCTCCTTCTTCTCTCTTATACCCCTCTCTCTTCCCCTCCTTTTT
AACTTTTCCCCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_g05.g1 MSMg01no465_g05.g1 CHROMAT_FILE:
MSMg01no465_g05.g1 PHD_FILE: MSMg01no465_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:28 2005
         (408 letters)



>mm_chr17_75430723_75431530
          Length = 808

 Score =  712 bits (368), Expect = 0.0
 Identities = 398/408 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaataatgtcacaatttttgtcctacattcagaccaagtggcccttcaaggaaagtgt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 taaaataatgtcacaatctttgtcctacattcagaccaagtggcccttcaaggaaggtgt 260

                                                                       
Query: 61  ctgaattgaaactatgacattggaatattgccatgattgagtttcttcttgattcctagg 120
           ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 261 ctgaattgaaactatgacattggaatattgccacgattgagcttcttcttgattcctagg 320

                                                                       
Query: 121 ttctcctctcagatccacgttgaaggataacttcaaaagagagggtacaatcccgactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctcctctcagatccacgttgaaggataacttcaaaagagagggtacaatcccgactca 380

                                                                       
Query: 181 tatgggtataaaatgaacatgtgccagagatttgattagcatgtgtttaaatgtgggaac 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgggtataaaatgaacgtgtgccagagatttgattagcatgtgtttaaatgtgggaac 440

                                                                       
Query: 241 catatatatgccagaactggttcaaagaaatggtggggcagatttagacataaatgcaaa 300
           || | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagagatgccagaactggttcaaagaaatggtggggcagatttagacataaatgcaaa 500

                                                                       
Query: 301 atgggtcaacccacagggtagcaaccacttggatttcctagaaaccactggtttgcattt 360
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 atgggtcaacccacagggcagcaaccacttggatttcctagataccactggtttgcattt 560

                                                           
Query: 361 ttatgatcatgaatcatttgcaatattatcggttttctataattgaca 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatgatcatgaatcatttgcaatattatcggttttctataattgaca 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)