BAC Information

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BAC

Clone NameMSMg01-466A08
Chromosome17 (Build37)
Map Location 20,978,131 - 20,978,552
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1
Downstream geneV1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466A08.T7 (MSMg01no466_a08.b1)MSMg01-466A08.TJ (MSMg01no466_a08.g1)
ACCAG550064AG550065
length1,393768
length of high quality
(start - end)
---422 (81 - 502)
definitionCHROMAT_FILE: MSMg01no466_a08.b1 PHD_FILE: MSMg01no466_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:21 2005CHROMAT_FILE: MSMg01no466_a08.g1 PHD_FILE: MSMg01no466_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTACTCTCACCCTACACCCCAAACCCACATCACATCCTCTCACTAATCAT
CTATTCTTCTATATCTGTCTCCCCCTCTCATTTNTTATTNNTNAGTGTTN
GCCTTCTTATCATACAAAGCCTTGACTCACAAAGCACATTCTACCACCCT
GTCTATCAACCACACACACCCACTCAGCTTAACTCTAATAATCCCTGANA
CGACACCGCGCACCCCTCTACACCAGTCGCATACATCCTCCCCACATTTA
TTATCACCACCACCATACCTCTACAACCCCTCTAATATTTTCACTCATAC
CCCGTATTGTACATACAGCCAACATTGATATTATGGATAAAGCATACAAA
TATGACATGAAACCTAACACATACATATTACTTATGATATTTTATNAANA
TTCTCAGCGACACACCACACATTAATATTCGAAGTCATCTCCACCACGAT
CCTATCGCATCTCTGCGTCATACTTTTTTGTTCGTAAGCTATANATATAC
CACAAACATAAAAACATATATCACATCTAATTACAATAATATCAAACAAA
ACAAATAAATTAACTCACCACATATCACAACCTTCTCTATTTTTCTTACC
TTATATATCTTATATCTCATTCCTTTCCATATTCTATTATCCTCTTTTAC
CCCTTTATTATTCGTCTCTGCATATATAGACACCTATAATAATAACAGCC
AGAATAATTATATCACTCCAGCGATTTATCCATCCGGACATCTCCCAACA
ACCCCATTTACTTCCTCCTCTCATCACGCTATTATACCCAGCAACACACA
TTCATCACTATATCATATACTACTTACATCTACCTATACTACACACGTAC
TTTTAACAATTATCAATCGTACTCATTTACATATTCATCTCTAACAACTC
TACCCATAAATATTAATCTCAANCAACCAACTATATACAACACTACTCAC
ACCACTACACTAATATNCATTTATTTCTACAGTATTAATTACACACCACC
AAAAATAACGCTCAAATATATTTACTCCTCTACTCTATACACCTCTGTCT
CCGTACCTCCTTCTGTCGTTACTATTATTACACCCACGCCCACTATTTCA
ATAGAATTTTCTCACATTNATTACCAATACCCCTCTCTCACGCTACTATC
TCACCCNTCACCCATCTTACTCTCATTCAATCATCACCTCCATCTCCCAT
GTTAACTTCTAACATCTATAATATATACTACTCATCCAAACCATGACTCT
ATATACATAGTATATCGCCACACCCCCCATACTCTCTACTCTCATTGACA
TCACCTCACTGTTCCTCTATTCACACTCACTATATTTCTCTTATTACCAG
CATCCATACTCCATCATCTTCCCTCTCACTATTATTATTATCG
TAACCCTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTCTAGCATGAGTACAGT
TTCTGTCATTTCCCCTACTTTAGTGATATGCTGAGTGCACGGGCATCTCA
CAGTGGGTTTTCCACTTTTCATAACTGAAGTTTCCAGAATATAAAGCCTT
ATACATAGCAGGAAAGAGTTTAAACTTAGGTGACACCCATAGCACATATT
TATAACATTCCTTTTAAATATGTAGTTGATAAGATTTCATATTTTATAGA
TTACATATGCATATATATTTTCACTTAGGTGTCATTTATAAGTCTTGATT
TATTACTAATAGTTTGACTTGACAGGGGCCTTAGTAAATAAACCTTCAAG
ACAGAAATTAATTACAACTTAAAGTCCTTCTGTTTGTTGGTATTCTTTTT
CTATGTGCAGGGGAGTTTTGTGTTCAGGTGTGTATGGACTTTTATGAGAC
TGTACAGTCAGAATGAAATTAGAGCTGTAGTTCCTGAGACAGTTTTTATT
CTTGTTCTTTATGAAAATTGGCCCTCTTACTCCGTCCGATATCCTCAGAA
TAATTTAACATTTTTTCTGGAAGGTCTGCTTCCAGCAATCTCACTCAACT
CCTGGGCCCTTTCTCCAAAAGGGTCCACAGGATCTATTACTAGGGTCCAC
CACCTCTCCCCCGAGCGTTGTTATTCTTTTCCGCTCCCTAATGCTTTCCC
TCGGTAATAATCATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_a08.g1 MSMg01no466_a08.g1 CHROMAT_FILE:
MSMg01no466_a08.g1 PHD_FILE: MSMg01no466_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:21 2005
         (422 letters)



>mm_chr17_20977931_20978752
          Length = 822

 Score =  785 bits (406), Expect = 0.0
 Identities = 418/422 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtctagcatgagtacagtttctgtcatttcccctactttagtgatatgctgagtgcac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tggtctagcatgagtacagtttctgtcatttcccctactttagtgatatgctgactgcac 260

                                                                       
Query: 61  gggcatctcacagtgggttttccacttttcataactgaagtttccagaatataaagcctt 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggcatctcacaatgggttttccacttttcataactgaagtttccagaatataaagcctt 320

                                                                       
Query: 121 atacatagcaggaaagagtttaaacttaggtgacacccatagcacatatttataacattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacatagcaggaaagagtttaaacttaggtgacacccatagcacatatttataacattc 380

                                                                       
Query: 181 cttttaaatatgtagttgataagatttcatattttatagattacatatgcatatatattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttaaatatgtagttgataagatttcatattttatagattacatatgcatatatattt 440

                                                                       
Query: 241 tcacttaggtgtcatttataagtcttgatttattactaatagtttgacttgacaggggcc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tcacttaggtgtcatttataagtcttgatttattactaatagtttgacttgacatgggcc 500

                                                                       
Query: 301 ttagtaaataaaccttcaagacagaaattaattacaacttaaagtccttctgtttgttgg 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagtaaataaaccttcaaaacagaaattaattacaacttaaagtccttctgtttgttgg 560

                                                                       
Query: 361 tattctttttctatgtgcaggggagttttgtgttcaggtgtgtatggacttttatgagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattctttttctatgtgcaggggagttttgtgttcaggtgtgtatggacttttatgagac 620

             
Query: 421 tg 422
           ||
Sbjct: 621 tg 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)