BAC Information

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BAC

Clone NameMSMg01-466I18
Chromosome17 (Build37)
Map Location 51,763,907 - 51,900,313
singlet/doubletdoublet
Overlap geneSatb1
Upstream genePlcl2, EG654432, Tbc1d5, LOC100043451, LOC100043452
Downstream geneEG628919, LOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466I18.T7 (MSMg01no466_i18.b1)MSMg01-466I18.TJ (MSMg01no466_i18.g1)
ACCAG550468AG550469
length769771
length of high quality
(start - end)		173 (138 - 310)429 (80 - 508)
definitionCHROMAT_FILE: MSMg01no466_i18.b1 PHD_FILE: MSMg01no466_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:04 2005CHROMAT_FILE: MSMg01no466_i18.g1 PHD_FILE: MSMg01no466_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,763,907 - 51,764,076)(51,899,885 - 51,900,313)
sequence
TCTCTTTTCTCAGCACCGGNGGGGGGAGCCCATCTTCATCACTCCGCGGA
GTTCTGGATTTTCACATAAATAACACGATCCTGAGTTATACTCTAGTCAT
TGCTTCACGGACTATATTTTCTAATCTAATATTCAGTGCTTTACTTTAAT
ATAAAACTTATATTAAATGCTTTAAATTTTTATACATTCATACAGTGTAT
TCTTATCAAATCACACTCCCCACACACACCTCCCCCTAACTTCTCATATA
CCAACTCCCCCCAACTTCACTCATGGACCATACTTTGAGGATTGCCTCTG
TTCTTTGAGCCTGTCGTCATTTGTTTCTGGAGCTGAATGTTTGAAGACTT
TTCCATGAAAAGAGACTGCTCCATCTCTCAAATACGAATTTCCTTGAGGC
CACAATGTCTTCCTTGTCTGTTCTTATATTCCCGGCTCCCAACACTCCGC
CTATCCCTGCCACTTATGTTATTCATTGTTGCCACTCGCACCATACATAG
TCCTGCTTCCTCCCCTTTTATTATCACCATTATCCCCTTTTTTTCTCTCT
TTTTTTCTCCTTTTTTCCCTTTCTCTCTCAATATACCAATTTCTCCCATT
ATTCTCCCCTTCCCTTTTCCTTTTTCCTTCACTCTCTTTTCCACGTTATT
TATTTTTTTTCTCCCTCCTGCTCCACCACACCCTCCTCCTATCTTTTCTC
ACTCTCTCTTCTTTTTCTCCTTTTATTTCCTCTTTTACATTTTTCTCCCC
CTACTTCCTCCCTATTATA

NNNCCGATGCTGTGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAATGTGGGTGAGAGCACAC
AAGAAGAATCGGAATGGACAGAATGTCGGGTCTGCAGACTCCAGAGAGAA
GGAGGGAGGTTTTACTGGAGTAAAAGTCCAGTACTGCTTATCATTCCAAA
ATATGCTTTGTTGCTTTTTATTCCTCCTCTCTGGCAGACCACACAGGGCT
TGTTCTGAAGAACATTTTCACTAATCTGATCAGGCAGCCAAATACGCCGG
GAAAACTGCTTTAATGATCCCACTAATTACCTCAAGTCAATATGAACTGT
ATTATTAGACTGAGGGAAAATATTCCATTAGGTCTCCCCCTCGGGAGTTT
CTCCGCTTTGTGATGTCACCGAAGCCTTCACCCTCTCGCTTGTAATTAAT
TTTATTTACACACGCAGGCACGCACAAGGTCACACCTGCAGAACCATCGC
TGGCCAGGGAGCGTGTGGCACTCGGGCTTAATCAGATCTGTCATAATTAC
CATTCTGCATGTTTCTGACACTCCCTGTGGAATATTTCACTTTACTTGGC
GCTTCCTTCATTTTTTTATGTATTGCGAGCGGGCTCTGACTTGGAATTTT
TATTCCCCAGGAAAAATTTTTTTTCCTCTTTCTTCTTTCTCTCCCCCCCC
CTCTAATAATGGGGCTCCCCAATGCTTTATGTTACTCCTGCTTTTTTCTT
CACCGGCTACGTGACAGATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_i18.b1 MSMg01no466_i18.b1 CHROMAT_FILE:
MSMg01no466_i18.b1 PHD_FILE: MSMg01no466_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:04 2005
         (173 letters)



>mm_chr17_51763707_51764279
          Length = 573

 Score =  290 bits (150), Expect = 3e-83
 Identities = 165/170 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctttactttaatataaaacttatattaaatgctttaaatttttatacattcatacagtg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctttactttaatataaaatttatattaaatgctttaaatttttatacattcatacagtg 260

                                                                       
Query: 61  tattcttatcaaatcacactccccacacacacctccccctaacttctcatataccaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 261 tattcttatcaaatcacactccccacacacacctccccctaacttctcacagaccaactc 320

                                                             
Query: 121 cccccaacttcactcatggaccatactttgaggattgcctctgttctttg 170
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 321 cccccaacttcactcatggaccatactttgaggtttgtctctgttctttg 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no466_i18.g1 MSMg01no466_i18.g1 CHROMAT_FILE:
MSMg01no466_i18.g1 PHD_FILE: MSMg01no466_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:04 2005
         (429 letters)



>mm_chr17_51899685_51900513
          Length = 829

 Score =  830 bits (429), Expect = 0.0
 Identities = 429/429 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatgtgggtgagagcacacaagaagaatcggaatggacagaatgtcgggtctgcagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agaatgtgggtgagagcacacaagaagaatcggaatggacagaatgtcgggtctgcagac 570

                                                                       
Query: 61  tccagagagaaggagggaggttttactggagtaaaagtccagtactgcttatcattccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tccagagagaaggagggaggttttactggagtaaaagtccagtactgcttatcattccaa 510

                                                                       
Query: 121 aatatgctttgttgctttttattcctcctctctggcagaccacacagggcttgttctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aatatgctttgttgctttttattcctcctctctggcagaccacacagggcttgttctgaa 450

                                                                       
Query: 181 gaacattttcactaatctgatcaggcagccaaatacgccgggaaaactgctttaatgatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gaacattttcactaatctgatcaggcagccaaatacgccgggaaaactgctttaatgatc 390

                                                                       
Query: 241 ccactaattacctcaagtcaatatgaactgtattattagactgagggaaaatattccatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ccactaattacctcaagtcaatatgaactgtattattagactgagggaaaatattccatt 330

                                                                       
Query: 301 aggtctccccctcgggagtttctccgctttgtgatgtcaccgaagccttcaccctctcgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aggtctccccctcgggagtttctccgctttgtgatgtcaccgaagccttcaccctctcgc 270

                                                                       
Query: 361 ttgtaattaattttatttacacacgcaggcacgcacaaggtcacacctgcagaaccatcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttgtaattaattttatttacacacgcaggcacgcacaaggtcacacctgcagaaccatcg 210

                    
Query: 421 ctggccagg 429
           |||||||||
Sbjct: 209 ctggccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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