BAC Information

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BAC

Clone NameMSMg01-466K16
Chromosome17 (Build37)
Map Location 73,930,935 - 73,931,381
singlet/doubletsinglet
Overlap geneGalnt14
Upstream geneAlk, Ypel5, Lbh, Lycat, LOC668709, Capn13, LOC100043666
Downstream geneEhd3, LOC240160, Xdh, Srd5a2, Memo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466K16.T7 (MSMg01no466_k16.b1)MSMg01-466K16.TJ (MSMg01no466_k16.g1)
ACCAG550560AG550561
length763754
length of high quality
(start - end)
447 (76 - 522)241 (74 - 314)
definitionCHROMAT_FILE: MSMg01no466_k16.b1 PHD_FILE: MSMg01no466_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:14 2005CHROMAT_FILE: MSMg01no466_k16.g1 PHD_FILE: MSMg01no466_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCATACAXXXXXXXXXXXXXXXXXXXXXXXXATACGAGAGACACC
GCGGAATTCTATGCTTCCCCATATGGGCTAAGAAATAGCCCTTTCCTCCT
ATATTAGATGTCCATTCTGTCTATCAGCTCTTTAAGGAGTGATGCTCTTA
TAATTAAAATTAACCATTAAGCTATAACATTGAAGGAGCAATTGCCTAAT
TCTGAGGAAATTTTAAATTTACAGCCAGCACCCGAGATAAAATGAACACT
AAGGAGAAGGAGAGAGAAGCCCACGGAAGATAAATAGAAAGCCAAGTGGG
ATATTGACTTGATCCTTCTCTAGTGCAGGGTAATTTGGCTTCTAAAGTGA
GTTAGATCATAATAAATTAAATTTAGATTTCTGCACATCAATTAAATAAC
TCCCAAGACAGAATTCCAGTGAGAAGGAGAGGTGATAATACATGGAGGGA
ATATGAAAATGAAGATCTGATCTAATAATCCATAATTGATGTGCTGTCCC
TTGGTAAGGGGAAAGGTTTCGCCAGCTCCTCCGTGGTCAGGTCAGCGAGG
CTAGCATGCTGTTTGGCTGGAGCTTGGCCTCAACCTTGGCACAAGCTTGT
TCCCAGTAAGATTTTCCTTTCTGAACCTTCCCATGAAAAGATCTTCATCC
ATGGTTGGGAAGCCCCAATCAATTTTGCTGAATTTCTTTCCCCTTCGCGG
ATGGTCTTTTTCTATCCAAGGGAACTCTTTTGTGGTGCTGCGGCGAACCT
AAACCTGGTTTTC
TTTCGCGATGCTGTGGGTGGCCTGGGGGCCGCCTGGTACTAGAATTTAGG
TGAACTATAGATTTATCAGCGGAATTCTCTGTTTAACTCTGTACCACATT
TTCAAATTGGGTTATTTTGTTTGCTGGTGTCTAACTGCTTGAGTTCTTTA
TGTATTTTGGAAATTATCTCCCTGTCAGATGTAGAGTTGGTGAAGTTTAT
TTTTCCTCAATCTGTAGGCTGACATTTTGTCGTATTGTCAGTGTCCTTTG
TCTTACAGAAATTGTTCAGTTTCATGAGGTCCCATTTATTAATTTTTGAT
TTTAGTGCCTGATTTACTGGTGTTCTGTTCAAGTTGTCTCCTGTACCAAT
AATGTCAAAGTTATTTCTCACTTTCTCTTCTATTAGATTTAGTGAATCTT
GTTTTATGTTCTGGTCTTTGATCCTCTTTAGTTTTGAGCTGGATTAAAAA
TATGGATTCTACTCATTATGTGGAATACTATGAACTATTCAGTACCCCCA
TAGTTCGTATCTCTAGCTGCATTTTTACACACAAAATGGTTTATTCTGTT
CCTCATTTTATTTGATTTTTTTTTTGTTTTTTCTCTACTTTTTATGCCCT
CTTTCCTTTATATTTTTGCTTCCTTACTTCCCCCTGTTTTTTTTTTTTTA
TAGTAACCTATCCTTACTATATATGACCCTCTTTTTCTCCCCACATCTGC
GCTTTCGTTCATCATTTTTTTTTTTCTCCCTTCTTTCTTTCTCTTTTTAT
TTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_k16.b1 MSMg01no466_k16.b1 CHROMAT_FILE:
MSMg01no466_k16.b1 PHD_FILE: MSMg01no466_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:14 2005
         (447 letters)



>mm_chr17_73930735_73931581
          Length = 847

 Score =  857 bits (443), Expect = 0.0
 Identities = 446/447 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctaagaaatagccctttcctcctatattagatgtccattctgtctatcagctctttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ggctaagaaatagccctttcctcctatattagatgtccattctgtctatcagctctttaa 588

                                                                       
Query: 61  ggagtgatgctcttataattaaaattaaccattaagctataacattgaaggagcaattgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ggagtgatgctcttataattaaaattaaccattaagctataacattgaaggagcaattgc 528

                                                                       
Query: 121 ctaattctgaggaaattttaaatttacagccagcacccgagataaaatgaacactaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ctaattctgaggaaattttaaatttacagccagcacccgagataaaatgaacactaagga 468

                                                                       
Query: 181 gaaggagagagaagcccacggaagataaatagaaagccaagtgggatattgacttgatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaaggagagagaagcccacggaagataaatagaaagccaagtgggatattgacttgatcc 408

                                                                       
Query: 241 ttctctagtgcagggtaatttggcttctaaagtgagttagatcataataaattaaattta 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttctccagtgcagggtaatttggcttctaaagtgagttagatcataataaattaaattta 348

                                                                       
Query: 301 gatttctgcacatcaattaaataactcccaagacagaattccagtgagaaggagaggtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gatttctgcacatcaattaaataactcccaagacagaattccagtgagaaggagaggtga 288

                                                                       
Query: 361 taatacatggagggaatatgaaaatgaagatctgatctaataatccataattgatgtgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 taatacatggagggaatatgaaaatgaagatctgatctaataatccataattgatgtgct 228

                                      
Query: 421 gtcccttggtaaggggaaaggtttcgc 447
           |||||||||||||||||||||||||||
Sbjct: 227 gtcccttggtaaggggaaaggtttcgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)