Query= MSMg01no467_m10.b1 MSMg01no467_m10.b1 CHROMAT_FILE:
MSMg01no467_m10.b1 PHD_FILE: MSMg01no467_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:45 2005
(453 letters)
>mm_chr17_71940935_71941787
Length = 853
Score = 832 bits (430), Expect = 0.0
Identities = 448/454 (98%), Gaps = 2/454 (0%)
Strand = Plus / Minus
Query: 1 tattccattttttgtttgtttttatggcacttcttaaaattggcaatattgctaatacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tattccattttttgtttgtttttatggcacttcttaaaattggcaatattgctaatacag 594
Query: 61 gtatcattgtactcacgtatatataaccaaagaaagattccttattcaagatactctgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gtatcattgtactcacgtatatataaccaaagaaagattccttattcaagatactctgtt 534
Query: 121 aggattgttatgtattgctcagtactatatcattgtgtagtaataaacacatctctttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aggattgttatgtattgctcagtactatatcattgtgtagtaataaacacatctctttga 474
Query: 181 tgagcagtaacatagcaaaatgcagttcccttacctgcagaattgcttttaaaatgtgaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggagcagtaacatagcaaaatgcagttcccttacctgcagaattgcttttaaaatgtgaa 414
Query: 241 ttccctgta-ttcttctaaagcgaaggtaggttgatccgcagctctctttcttccctaca 299
||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 413 ttccctg-agttcttctaaagcgaaggtaggttgatccgcagctctctttcttccccaca 355
Query: 300 ggtaactttggatgtattagatcctcaagttgctttgcttgccttgatcccaaatcttaa 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agtaactttggatgtattagatcctcaagttgctttgcttgccttgatcccaaatcttaa 295
Query: 360 ataatggcgtgcatgctggatacttggcaaagtgagtaacagggtagcgggagtggggct 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ataatggcgtgcgtgctggatacttggcaaagtgagtaacagggtagcgggagtggggct 235
Query: 420 tttgttgttcatatctgggttgctagagatcgaa 453
||||||||||||||||||||||||||||||||||
Sbjct: 234 tttgttgttcatatctgggttgctagagatcgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_m10.g1 MSMg01no467_m10.g1 CHROMAT_FILE:
MSMg01no467_m10.g1 PHD_FILE: MSMg01no467_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:45 2005
(461 letters)
>mm_chr17_71775700_71776565
Length = 866
Score = 746 bits (386), Expect = 0.0
Identities = 449/478 (93%), Gaps = 18/478 (3%)
Strand = Plus / Plus
Query: 1 agttattgacagcattaactaaaaatgtgcaaatcaccagaatatcaggtactactgata 60
|||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 201 agttattgacagcactaactaaaattatgcaaatcaccagaatatcaggtactactgata 260
Query: 61 catttttgaaaagttaggcctactcttactttgcctaataaaaagccaaaataaaaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttttgaaaagttaggcctactcttactttgcctaataaaaagccaaaataaaaatat 320
Query: 121 atcttgatattaacacttagatagatgtctttcttgatttatagtgtaaaataactttta 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 321 atcttgatattaacacttagatagatgtctttcttgatttataatgtaaaatacctttta 380
Query: 181 aagacaaaata---t--tctattcagaaattaaatagcattattaccttaattcaaaaat 235
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagacaaaataaaatactctattcagaaattaaatagcattattaccttaattcaaaaat 440
Query: 236 agaaatttattttatttaattttctttcctttttt---tttttgtttgtttgtttgatt- 291
||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 441 agaaatttaagttatttaattttctttccttttttgtttttttgtttgtttgtttgtttg 500
Query: 292 -------ttaaagtgatggtagcagggccctgtctaccacctctccacattaatacatgc 344
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 501 tttgatcttaaagtgatggtagcagggccctctctaccacctctccacattaacacatgc 560
Query: 345 tgtcctggaacttactatatagctcaggctggccctcaatgtcccaccccagacttctgg 404
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 tgtcctggaacttactatatagctcaggctggcccccaatgtcccaccccagacttctgg 620
Query: 405 gggaccatatgctactatcttactagctactactttttcactgtt-tttaacttctta 461
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 621 gggaccatatgctactatcttactagctactactttttcactgttcttta-cttctta 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 866
Length adjustment: 10
Effective length of query: 451
Effective length of database: 856
Effective search space: 386056
Effective search space used: 386056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
