Query= MSMg01no468_b19.b1 MSMg01no468_b19.b1 CHROMAT_FILE:
MSMg01no468_b19.b1 PHD_FILE: MSMg01no468_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:11 2005
(487 letters)
>mm_chr17_80611725_80612611
Length = 887
Score = 480 bits (248), Expect = e-139
Identities = 306/330 (92%), Gaps = 16/330 (4%)
Strand = Plus / Minus
Query: 1 tctggccttaaactcatagaactctgcttgcctttgcctcctgattgctgggagtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tctggccttaaactcatagaactctgcttgcctttgcctcctgattgctgggagtttcct 327
Query: 61 tagaaaatgacatttattattattgttttttactaaaatacatttaaaacttaaaaatac 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tagaaaatgacatttattatcattgttttttactaaaatacatttaaaacttaaaaatac 267
Query: 121 attcatttactcagtgcactcgcgaaaacacacacacacactcacacacatacat----a 176
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 266 attcatttactcagtgcactcgcaaaaacacacacacacactcacacacatacatacaca 207
Query: 177 cacacacacactcat--acacacactcacagacacatacatacaca--cacacacacaca 232
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 206 cacacacacactcatacacacacactcacagacacatacatacacactcacacacacaca 147
Query: 233 ctcacacacacacacacacactcatac-t-cacaca-tacatacacacacacacgcacac 289
| |||||||||| |||| ||| ||||| | |||||| | ||||||||||||||||| |||
Sbjct: 146 cacacacacacatacactcacacatacatacacacagt-catacacacacacacgctcac 88
Query: 290 actcacacactcacaca--cagacacacac 317
|| ||||||||||||| || ||||||||
Sbjct: 87 ac--acacactcacacatacatacacacac 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no468_b19.g1 MSMg01no468_b19.g1 CHROMAT_FILE:
MSMg01no468_b19.g1 PHD_FILE: MSMg01no468_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:11 2005
(459 letters)
>mm_chr17_80416556_80417414
Length = 859
Score = 683 bits (353), Expect = 0.0
Identities = 368/373 (98%), Gaps = 2/373 (0%)
Strand = Plus / Plus
Query: 87 tttagagtgcttcttccaagctgtgctgattgacggagcggcgacacttctttctagcca 146
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 287 tttagagtgcttcttccaagctgtgctgattgaccgagcggcgacacttctttctagcca 346
Query: 147 tgactctactagagtcatggcataccttggccactaggggacgctcgaggttcccttaat 206
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 347 tgactctactagagtcatggcatacattggccactaggggacgctcgaggttcccttaat 406
Query: 207 tcactctagttaagcagctaggatggatggtcaagggcactaagatttgagccaatgtga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tcactctagttaagcagctaggatggatggtcaagggcactaagatttgagccaatgtga 466
Query: 267 tttgcattctccctctctctctacgggaagctcctgcctctggtcttatcaaaa-agtaa 325
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 467 tttgcattctccctctctctctacgggaagctcctgcctctggtcttatcaaaaca-taa 525
Query: 326 aaataaaaataaaaaatgcatacacagcgccgcattatctttctgaaccagcttttcttt 385
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaataaaaataaaacatgcatacacagcgccgcattatctttctgaaccagcttttcttt 585
Query: 386 tggttcacactgaaaccggattaaaacggaaagctatttcctacacaaagctaaatctag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tggttcacactgaaaccggattaaaacggaaagctatttcctacacaaagctaaatctag 645
Query: 446 atcctgaagcaag 458
|||||||||||||
Sbjct: 646 atcctgaagcaag 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
