BAC Information

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BAC

Clone NameMSMg01-468D02
Chromosome17 (Build37)
Map Location 69,641,692 - 69,641,893
singlet/doubletsinglet
Overlap genenone
Upstream geneD930040M24Rik, EG622645, Epb4.1l3, 2410021H03Rik
Downstream geneZfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468D02.T7 (MSMg01no468_d02.b1)MSMg01-468D02.TJ (MSMg01no468_d02.g1)
ACCAG551722AG551723
length804814
length of high quality
(start - end)
209 (44 - 252)253 (75 - 327)
definitionCHROMAT_FILE: MSMg01no468_d02.b1 PHD_FILE: MSMg01no468_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:18 2005CHROMAT_FILE: MSMg01no468_d02.g1 PHD_FILE: MSMg01no468_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAGGATCCGCGGAA
TTCTGTACTTTTATCCCCTCTGGAAAAGGATGTACTTATAAGTCCCCCTC
CTCACCCTTAATTGTTTTATGCTATGGGACTCTTTTTTTGCTTCTTAAAA
ACTATGAGCCAAGAAGAAACTCCAGCATTCGATGTCGTTAGGGATGAGGC
TGTGTTACAAGCACTGCCTTATATGACATAGGGTGTGGCTCCCACTGCAA
CGACAGGTTCGAATCGGACACAAGACATGGCTACCGCTCACAGCAGCTGC
AAATTTCATTGCTTGATTTAATAATTCATTAGCCACTACCAAGCATCCCC
TACTCCTCAGTTTCACGAATGTATAAACCTGGCTTAGTCATGTGAGAGAC
TTAAGTAATCCTGAAGGGTTTCATGTCACTAAGATATTATGAAAAATGTC
CTCAGATACACTTTGAGAAGATAAAACAATTCCACTTCTAGGAGCTGTTT
GCCTCACTAGAAAGTGTGCTTCTCTGTTTGCTCTCAGATTCAGTACTGAG
TGTTGAGACTACTATAATGTACCATCCCTTTTGAACGTGCACTGACGAGT
TGCTAAGTATAAAATATAGCCCGGCAATACCCGGTCTTCTACCACGAGCC
TTCCATACCTTATCTCCTGGTTTATACCTCTTCCTACCCTCTTCCGGAAT
TTATTTTCTCCCCCATATACCATTATTGATTTGTTTCACTCCTCTTCGGT
ATTTTAATCACTACTCCGTTTAATTTCCCCCATCTTCTCTCTCTTGTCCT
CTTA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACTTGAAAAAATGTTCAATATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTCGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGTATATATGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCTAGATGCCCCTCATCAGAGGAACGGATTCTGAATAT
GTGGTTCATCTACACCATGTAGTACTATTCCGCTACTACGCTGTATGAAT
TTATGACATTCTTAGCTCCATGTATGTCCCAGCATATTTTCCTTTCTCGA
TTGTGGTTCATTTCTTTTTATTATCTTCAAATATACATGTTTTTGCTCGG
CTATTTTTCCACCTTAATCCTTTTTCTTATTTATTCCTTTCCGTCTTCTT
GGTCAAATCCTTCGTTGACCTATATCTTCTCTCTTCTTTTACTATATCAC
CCTCCCATTATTAGTTATTTTTTATTTCTTCATTATATTTCATATTGTCT
ATATATACTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_d02.b1 MSMg01no468_d02.b1 CHROMAT_FILE:
MSMg01no468_d02.b1 PHD_FILE: MSMg01no468_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:18 2005
         (209 letters)



>mm_chr17_69641489_69642099
          Length = 611

 Score =  311 bits (161), Expect = 1e-89
 Identities = 192/205 (93%), Gaps = 8/205 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtacttt-tatcccctctggaaaaggatgtacttataagtccccctcctcac 62
           |||||||||||||||  || | ||||||||||||||||||||||||| ||||||||||||
Sbjct: 204 ggaattctgtactttcaat-ctctctggaaaaggatgtacttataagcccccctcctcac 262

                                                                       
Query: 63  ccttaattgttttatgctatgggactc----tttttttgcttcttaaaaactatgagcca 118
           |||||||||||||||||||||||||||    |||||||  ||||||||||||||||||||
Sbjct: 263 ccttaattgttttatgctatgggactcttttttttttt--ttcttaaaaactatgagcca 320

                                                                       
Query: 119 agaagaaactccagcattcgatgtcgttagggatgaggctgtgttacaagcactgcctta 178
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 agaagaaactccagcattctatgtcgttagggatgaggctgtgttacaaacactgcctta 380

                                    
Query: 179 tatgacatagggtgtggctcccact 203
           |||||||||||||||||||||||||
Sbjct: 381 tatgacatagggtgtggctcccact 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 611
Length adjustment: 9
Effective length of query: 200
Effective length of database: 602
Effective search space:   120400
Effective search space used:   120400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)