Query= MSMg01no469_c17.b1 MSMg01no469_c17.b1 CHROMAT_FILE:
MSMg01no469_c17.b1 PHD_FILE: MSMg01no469_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:39 2005
(399 letters)
>mm_chr17_85691714_85692512
Length = 799
Score = 741 bits (383), Expect = 0.0
Identities = 395/399 (98%)
Strand = Plus / Plus
Query: 1 aaagacatccctagggccacagattggaagagtccttgggcgttaggcccggaaggaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagacatccctagggccacagattggaagagtccttgggcgttaggcccggaaggaaaa 260
Query: 61 ggagaacagacagacatgggctttgtagttgttgcttaagcaacctaagtgttcaaaggg 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgaacagacagacatgggctttgtagttgttgcttaagcaacctaagtgttcaaaggg 320
Query: 121 agagcaagacctaaaggttgtaaagatttaatcctgttctactcagcacacagcagtgtc 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagcaagacctaaaagttgtaaagatttaatcctgttctactcagcacacagcagtgtc 380
Query: 181 agggctgtgagccactattttacacaggcggcttggccccttggctcttgttcgtgttct 240
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggctgtgagccactatgtgacacaggcggcttggccccttggctcttgttcgtgttct 440
Query: 241 gttctgctttaagaagtaagtttggccagagagaggtggcgcatgcctttaataccagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttctgctttaagaagtaagtttggccagagagaggtggcgcatgcctttaataccagca 500
Query: 301 ctcgtgaggcagaggcagacggagttcgaggccagcctggtcttcagagcaagttctagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcgtgaggcagaggcagacggagttcgaggccagcctggtcttcagagcaagttctagg 560
Query: 361 acagccagggctacacagagaagctctgtcaggcggtgg 399
|||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagccagggctacacagagaagctctgtcaggcggtgg 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_c17.g1 MSMg01no469_c17.g1 CHROMAT_FILE:
MSMg01no469_c17.g1 PHD_FILE: MSMg01no469_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:39 2005
(504 letters)
>mm_chr17_85860742_85861649
Length = 908
Score = 951 bits (492), Expect = 0.0
Identities = 503/508 (99%), Gaps = 4/508 (0%)
Strand = Plus / Minus
Query: 1 aaagtggtctttcaggcctgatggtgtgtcagacaacactgggctgggctccttcacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 aaagtggtctttcaggcctgatggtgtgtcagacaacactgggctgggctccttcacaac 649
Query: 61 tgagaaacattccgctcaggaaaa-gtatttgctctggctaaagtcagggtgcctttcaa 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 648 tgagaaacattccgctcaggaaaatgtatttgctctggctaaagtcagggtgcctttcaa 589
Query: 120 actgcctttcctctgtgagatacactcagtgta---atgatatctttgcatcctgaagac 176
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 588 actgcctttcctctgtgagatacactcagtgtaatgatgatatctttgcatcctgaagac 529
Query: 177 agggtgtttgatccatggagaacaacccagagacagaagctggggccaagcagcctaatt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agggtgtttgatccatggagaacaacccagagacagaagctggggccaagcagcctaatt 469
Query: 237 gtccccagatactggtgtgtatgcctatgttcagtgggactctcttgaccatgtgggcat 296
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtccccagagactggtgtgtatgcctatgttcagtgggactctcttgaccatgtgggcat 409
Query: 297 ctggcccctcccccaaagtccaacgaaagggtttgccacacaatgcttcccaattgtctg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctggcccctcccccaaagtccaacgaaagggtttgccacacaatgcttcccaattgtctg 349
Query: 357 acattgattggaaccaaatcaaacgctgactaagcacaaagccaaaatctacagaagctg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 acattgattggaaccaaatcaaacgctgactaagcacaaagccaaaatctacagaagctg 289
Query: 417 ggctggaggaaggagtcagtccccacctagcaagacaaaaacagtgatgcccacttatcc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ggctggaggaaggagtcagtccccacctagcaagacaaaaacagtgatgcccacttatcc 229
Query: 477 cttagaaaaaggcgtgccctactctggc 504
||||||||||||||||||||||||||||
Sbjct: 228 cttagaaaaaggcgtgccctactctggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 908
Length adjustment: 10
Effective length of query: 494
Effective length of database: 898
Effective search space: 443612
Effective search space used: 443612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
