BAC Information

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BAC

Clone NameMSMg01-469I05
Chromosome17 (Build37)
Map Location 61,724,030 - 61,724,570
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433129, EG620725
Downstream geneLOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469I05.T7 (MSMg01no469_i05.b1)MSMg01-469I05.TJ (MSMg01no469_i05.g1)
ACCAG552732AG552733
length737759
length of high quality
(start - end)
525 (78 - 602)541 (78 - 618)
definitionCHROMAT_FILE: MSMg01no469_i05.b1 PHD_FILE: MSMg01no469_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:07 2005CHROMAT_FILE: MSMg01no469_i05.g1 PHD_FILE: MSMg01no469_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTTCCCCTGAGCCCCATTTTTTAATGGGGTTATTT
GATTTTCTGGAGTTCACCTTCTTGAGTTCTTTATATATATTAGATATTAG
TCCCATAACTGATTTAGGATAGGTAAAGCCCCTTTCCCAATCTTTTGGTG
GCATTTTTGTCTTATTGATGGTGTCTTTTGCCTTGCATGTTAACAGCCAG
TTGTGCCAGCACCATTTGTTGAAATTGCTGTCTTTTTTCCACTGGATGGT
TTTAGCTCCCTTGTCAAAGATCATGTGATTATAGGTGTGTGGGTTCATTT
CTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTCTCACTATACCAG
TACCATGCAGTTTTTATCACAATTGCTCGGTAGTATAGATTTAGGACAGG
CATGGTGATTCCACCTTAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTA
CCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAGATTGCCCTTTCTAAT
TTGTTCAAAAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTA
GATTGCTCTTGGCAAGATAGCCATTTTTACTATATTCATCCTGCCAAACC
ATGAACATGGGAAATCTTTTCATCTTCTGAGATCCTTAATTTTTTTCCCA
GACTTGAAGTACTTATCATACAGATTTTTTCCTTCTT
GCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATTACTATGAAGATGCATATTT
AAACAATATCTAGGTCCAAGTGGATCTTAAATGATCATTTATTCCCTTTG
TTCACTGGTAAATTATAACTAAATTTTAAAATTTTGAGGTCTTTAGCACT
TTTATTCATGGTCCAAAACAAAACAATTTGTATAAAATTAAAAATAATTT
TAATATTTTTGAGCAATAAAACCTAGGAAAAGACTTTGTCTAGATTTGAT
TTAAACTTATTACATATTCTCTTCTTCCTTTCCAACTTCATCTATGTAGG
ACACCCAAGTAAATAGTTTTAAATTAATTGATTAATCATTTATCAGCCAA
ATAATATGGATGCTCTGTAGGTTAAAAATTCTAATCATGAAGAAATGCTG
AACTTTCTGAGCAGCTATATAATTGTTGCTCAGTTCTTTTCTTTCCTTTG
TTCCTATCTTGTCTTTGAATATTTTCTCTATGTTTACTATTTCCAACTGC
TTCCAGATAAATGATTGTATTTCCTGAAGAGAACATGTAGGAAGTACTCA
AAAGGAGACTTTGGATTGTTGACCTTCTGTTAGTGACAAATATTTTGTCA
TCAAAAGACACTAGAAGACAGAANATCTTTAACATCCTGAAGCTTAATTT
GTGACTGTAAATGGCTAGATTCTGAGGGACAGAATACAGTACTTTCTAGG
GCTTGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_i05.g1 MSMg01no469_i05.g1 CHROMAT_FILE:
MSMg01no469_i05.g1 PHD_FILE: MSMg01no469_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:07 2005
         (541 letters)



>mm_chr17_61723830_61724770
          Length = 941

 Score = 1015 bits (525), Expect = 0.0
 Identities = 537/541 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattactatgaagatgcatatttaaacaatatctaggtccaagtggatcttaaatgatca 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 aattactatgaagatgcatatttaaacaatatcaaggtccaagtggatcttaaatgatca 260

                                                                       
Query: 61  tttattccctttgttcactggtaaattataactaaattttaaaattttgaggtctttagc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttattccctttattcactggtaaattataactaaattttaaaattttgaggtctttagc 320

                                                                       
Query: 121 acttttattcatggtccaaaacaaaacaatttgtataaaattaaaaataattttaatatt 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttttattcatggttcaaaacaaaacaatttgtataaaattaaaaataattttaatatt 380

                                                                       
Query: 181 tttgagcaataaaacctaggaaaagactttgtctagatttgatttaaacttattacatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgagcaataaaacctaggaaaagactttgtctagatttgatttaaacttattacatat 440

                                                                       
Query: 241 tctcttcttcctttccaacttcatctatgtaggacacccaagtaaatagttttaaattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcttcttcctttccaacttcatctatgtaggacacccaagtaaatagttttaaattaa 500

                                                                       
Query: 301 ttgattaatcatttatcagccaaataatatggatgctctgtaggttaaaaattctaatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgattaatcatttatcagccaaataatatggatgctctgtaggttaaaaattctaatca 560

                                                                       
Query: 361 tgaagaaatgctgaactttctgagcagctatataattgttgctcagttcttttctttcct 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 tgaagaaatgctgaactttctgagcagctatataactgttgctcagttcttttctttcct 620

                                                                       
Query: 421 ttgttcctatcttgtctttgaatattttctctatgtttactatttccaactgcttccaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgttcctatcttgtctttgaatattttctctatgtttactatttccaactgcttccaga 680

                                                                       
Query: 481 taaatgattgtatttcctgaagagaacatgtaggaagtactcaaaaggagactttggatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaatgattgtatttcctgaagagaacatgtaggaagtactcaaaaggagactttggatt 740

            
Query: 541 g 541
           |
Sbjct: 741 g 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)