BAC Information

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BAC

Clone NameMSMg01-470E14
Chromosome17 (Build37)
Map Location 50,605,548 - 50,606,032
singlet/doubletsinglet
Overlap genenone
Upstream geneDaam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream genePlcl2, EG654432, Tbc1d5, LOC100043451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470E14.T7 (MSMg01no470_e14.b1)MSMg01-470E14.TJ (MSMg01no470_e14.g1)
ACCAG553324AG553325
length773765
length of high quality
(start - end)
74 (171 - 244)483 (72 - 554)
definitionCHROMAT_FILE: MSMg01no470_e14.b1 PHD_FILE: MSMg01no470_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:08 2005CHROMAT_FILE: MSMg01no470_e14.g1 PHD_FILE: MSMg01no470_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATATTTGCGGCGCTAAACGACNACCACATGCCTACGGCGGCGGAANTCN
NCGCTATCTCTCCACCCCACTTTTNAANGGGGGGANTTGATTTTCTGGGG
TCCACCTTCTTGTATTCTTTATATATGTTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATGCTTTCCCAATCTGTTGGTGGCCTTTTTGTCT
TATTGACGGTGTCTTTTCCCTTACAGAAGCTTTGCAGTTTTATGAGTTTT
CATTTGTCTATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAA
GAACTTTTCCCCTGGGCTCATATCTTCGAGGGNTTCCCCCACTTTCTCCT
CTATTATTTTCAATGTCTCTGGCTTTATGTGGAGTTCCTTGATCCACTTA
GATTTGACCTTACCACAGGAGATAGGAATGGATCAATTCACATTCTTCTA
CATGATACCCGCCAGTTGTGCCAGCACCATTTGTGGAAAATGCTGCCTTT
TTTCCCCTGGATGGTATTACCTCCCTTCGCCCAGATCACGTGACCATAGG
TGTGTGCCTTCATTTCTGCCCCTTCCCTTTCCATTCATCCGCTCTACCTG
TCCGCTGCTACTCTTACTCTCTTCGTCGTCTGCCTGTTTTCCTCCCCCCC
TCTTTTATCTTTTTTTTCGTCCGGACTCCCCGCTTCTTTGTTCCCCCTCT
CTTTTCTCCCTTCATCCCCCTCCGTTTCTCCTCTCCCACTCCTCTCCTCT
CCTCCTTTTTTCCCCCCTCTCCC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGATGAGCAAGCCAGTAAGCAATGTGCC
TCCATGGCCTCTGCATCAATTCCCTGTCTAGGATCCCCTGCCTAGGGAAT
GATGCCACCCACAGTGGGCCAGGCCTCCCACAACAATTAATAATCAAAAC
ACTCTCCTGCAGATAACCTACAGCATAACCTGATCTGGAGTCCCTTACAG
AGACTCTCCCAGTGATTCGAGGTGTTGGCAAGTTGACAAACTAATGATGA
CAAATGTGATGTGACCAGTTTGTACAAGCATCAGAAAACTATTGCTATTG
AATTCAAGTTCAAGAGCTCAGCTACTGTCAGGGAGTATCCCAGGTTGGCC
TGTGTGAACTTCAGCTTAGGACCATGGCATCATCCTTTGGTGCCTCTGCC
TCATTTTTGTTTCTACTATGAATAGCAAAATATTTGATAAATCATCTTCT
GCTTGTCAGAAACTCTGAATGACCACACTGCTTTGTTTCTATGCAGATAC
TTCCCACATTATGTTGATTTGGCATGGCTTCTTTATTTTCTAAGTGCCCT
AGCTCCCATAGGTAAGGTAAGCACTGTTCACTGTACCCCAAAAGCCCACA
CTGATTTCCTTTTGTGCTTTGATCACAGTCCGCATCTATCCTGCACTCCC
CTGTCTAAGCTCCCGTGGTCTGCCTTCTAAATCCAAGTCAGTCTCTTTTA
CATTATAATTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_e14.g1 MSMg01no470_e14.g1 CHROMAT_FILE:
MSMg01no470_e14.g1 PHD_FILE: MSMg01no470_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:09 2005
         (483 letters)



>mm_chr17_50605350_50606232
          Length = 883

 Score =  876 bits (453), Expect = 0.0
 Identities = 477/485 (98%), Gaps = 2/485 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagatgagcaagccagtaagcaatgtgcctccatggcctctgcatcaattccctgtctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aagatgagcaagccagtaagcaatgtgcctccatggcctctgcatcaattccctgtctag 258

                                                                       
Query: 61  gatcccctgcctagggaatgatgccacccacagtgggccaggcc-tcccacaacaattaa 119
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 259 gatcccctgcctagggaatgatgccacccacagtgggccaggccttcccacaacaattaa 318

                                                                       
Query: 120 taatcaaaacactctcctgcagataacctacagcataacctgatctggagtcccttacag 179
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 caatcaaaacactcccctgcagataacctacagcataacctgatctggagtcccttacag 378

                                                                       
Query: 180 agactctccca-gtgattcgaggtgttggcaagttgacaaactaatgatgacaaatgtga 238
           ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 379 agactctcccaggtgattagaggtgttggtaagttgacaaactaatgatgacaaatgtga 438

                                                                       
Query: 239 tgtgaccagtttgtacaagcatcagaaaactattgctattgaattcaagttcaagagctc 298
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgtgaccagcttgcacaagcatcagaaaactattgctattgaattcaagttcaagagctc 498

                                                                       
Query: 299 agctactgtcagggagtatcccaggttggcctgtgtgaacttcagcttaggaccatggca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agctactgtcagggagtatcccaggttggcctgtgtgaacttcagcttaggaccatggca 558

                                                                       
Query: 359 tcatcctttggtgcctctgcctcatttttgtttctactatgaatagcaaaatatttgata 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcatcctttggtgcctctgcctcatttttgtttctactatgaatagcaaaatatttgata 618

                                                                       
Query: 419 aatcatcttctgcttgtcagaaactctgaatgaccacactgctttgtttctatgcagata 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aatcatcttctgcttgtcagaaactctgaatgaccacactgctttgtttctatgcagata 678

                
Query: 479 cttcc 483
           |||||
Sbjct: 679 cttcc 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)