BAC Information

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BAC

Clone NameMSMg01-470G22
Chromosome17 (Build37)
Map Location 26,412,618 - 26,413,105
singlet/doubletsinglet
Overlap geneLuc7l
Upstream genePrss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643
Downstream geneEG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470G22.T7 (MSMg01no470_g22.b1)MSMg01-470G22.TJ (MSMg01no470_g22.g1)
ACCAG553436AG553437
length775760
length of high quality
(start - end)
286 (174 - 459)489 (73 - 561)
definitionCHROMAT_FILE: MSMg01no470_g22.b1 PHD_FILE: MSMg01no470_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:20 2005CHROMAT_FILE: MSMg01no470_g22.g1 PHD_FILE: MSMg01no470_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCACAACACCGCGCGAA
TCAGAACTTTTCCGCTGACCAACGAGAGTACCAGTGAGTGCAGCTTTACG
AGGTAAGTCTGATCTTGAACTTTCTAAGGAAATTCAAGACAGTCTATCAG
AAGTAAAGTGGAAAATAGCTTTATAAGGTATGTTTGGCCTTGAACTTTCT
CTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGATTAA
TATAGGGCTGAAAATTCTAGAGGAAATTCAGGACAATCTATCAGAAGTAA
AGCGGGGAGAGAGAATATTTTTTTTGAGAAAATATGGTACACAAAATAAG
TATACAGGCTCTTTCCAAGGGTCTTGAACCTGAGGAAAAGTTTAGGTCAG
GTAAGAATACCTGGGGAGAGATTAGAAGGAAGGAAAAGGAAAAAGAAAAG
AAAAAAGATCAATTAGAGAAGCCAGTTCTTAGTAGTTCTGAATCAGATGA
AAAGGCTATTAGGGCCTGGAAGGCGCTCTCTCGAGCAGGTGAAGCCACTG
GACAATAATGACCGAGGCAGGCTCTTACAGTCTACAAGGTCTTATTGTCC
ACCCCTAGAGTTGTAGATCAAGATTATAAAGGGGGAACCTCAGGGGTCCC
TGCTCCTTGCCTTCCAGTTGCCTTTTTCCAAAACCCCAAGGGGTACCAAA
TAGCTTCAACTTAATAAACTCTGCCCAAGCCTAACATGGCCTGTTTTTTC
CTTCCCCCTGTGAATCCCCAACACC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACACGCTCCAGGCAGGAGCTCAGGTCAG
TCACCGACAGGCTGACAGGTCGGGATCTCGAGGAACAGTCCAGCCTGGCA
GGCAGCCCACGCATACAGCCTCACTGCGCATGCTCGGGCGAGGCAGTAAC
CAACTTGGCCCTTGCCGCCACACCTGCTTCTCGCACCCAAACAAACAACA
AAACAAAAAGAAACAAACAACACAGAAACATGTCCAAATCCAACTTAAAG
AATACAGATAACTTTTTATATATTAAAGCTAAAAGTAACCAGACTCCCAG
GAGCTCTGCAGAAACAAAATATATTAACATTACCCTCAACTGATCAAGCT
TCTCCCGGATCTGAATGAACCCCAGGTGTAACTTGCCCCCGAAGTGGTCT
GCAAGCCGACGGTCATTGTCATGGAGACCAAGGTAAGCTGAACAAACCTC
GCAAACACGGAGCTTTTGCTGTTGAAAACTGGATGCAGGCATGGAATTTC
TATATTCTTCCTATGGGGGAAAACATAAAGATGAGGTATTTCAGAACTGT
CACGCTGCACAGGTCCTCCCAGTGGTTAAAACTGAAACAAACGCGACGTC
TTACTACTTACTGAAACTGGGTTGTTCCGCTTGAAGGTTATGTTGGAAAC
TTTCATCTCCCCTTTTTTTTTTTAACTAACATTACATGTCCGGTAGCTCC
CCGATCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_g22.g1 MSMg01no470_g22.g1 CHROMAT_FILE:
MSMg01no470_g22.g1 PHD_FILE: MSMg01no470_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:20 2005
         (489 letters)



>mm_chr17_26412255_26413142
          Length = 888

 Score =  899 bits (465), Expect = 0.0
 Identities = 483/489 (98%), Gaps = 1/489 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacgctccaggcaggagctcaggtcagtcaccgacaggctgacaggtcgggatctcgag 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 acacgctccaggcacgagctcaggtcagtcaccgacaggctgacaggtcgggatctcgag 792

                                                                       
Query: 61  gaacagtccagcctggcaggcagcccacgcatacagcctcactgcgcatgctcgggcgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gaacagtccagcctggcaggcagcccacgcatacagcctcactgcgcatgctcgggcgag 732

                                                                       
Query: 121 gcagtaaccaacttggcccttgccgccacacctgcttctcgcacccaaacaaacaacaaa 180
           |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gcagcaaccaacttggccctcgccgccacacctgcttctcgcacccaaacaaacaacaaa 672

                                                                       
Query: 181 acaaaaagaaacaaacaacacagaaacatgtccaaatccaacttaaagaatacagataac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 acaaaaagaaacaaacaacacagaaacatgtccaaatccaacttaaagaatacagataac 612

                                                                       
Query: 241 tttttatatattaaagctaaaagtaaccagactcccaggagctctgcagaaacaaaatat 300
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttttta-aaattaaagctaaaagtaaccagactcccaggagctctgcagaaacaaaatat 553

                                                                       
Query: 301 attaacattaccctcaactgatcaagcttctcccggatctgaatgaaccccaggtgtaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 attaacattaccctcaactgatcaagcttctcccggatctgaatgaaccccaggtgtaac 493

                                                                       
Query: 361 ttgcccccgaagtggtctgcaagccgacggtcattgtcatggagaccaaggtaagctgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttgcccccgaagtggtctgcaagccgacggtcattgtcatggagaccaaggtaagctgaa 433

                                                                       
Query: 421 caaacctcgcaaacacggagcttttgctgttgaaaactggatgcaggcatggaatttcta 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 432 caaacctcgcaaacacggagtttttgctgttgaaaactggatgcaggcatggaatttcta 373

                    
Query: 481 tattcttcc 489
           |||||||||
Sbjct: 372 tattcttcc 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space:   420562
Effective search space used:   420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)