Query= MSMg01no471_b23.b1 MSMg01no471_b23.b1 CHROMAT_FILE:
MSMg01no471_b23.b1 PHD_FILE: MSMg01no471_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:15 2005
(672 letters)
>mm_chr17_63459237_63460307
Length = 1071
Score = 1245 bits (644), Expect = 0.0
Identities = 662/668 (99%), Gaps = 1/668 (0%)
Strand = Plus / Minus
Query: 5 gaattcactgggtgtgcatgtagagagatactgctatttgtaatatgtgttcttggaaaa 64
|||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 871 gaattcactgggtggggatgtagagagataccgctatttgtaatatgtgttcttgg-aaa 813
Query: 65 atccctgaggcagaaagtccttaattagtgaggaaagtaagagtctgctacttaagctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 atccctgaggcagaaagtccttaattagtgaggaaagtaagagtctgctacttaagctct 753
Query: 125 ggatgcaaggtgtactggagaagtgtttgagttcaggggaagctgtttcaaaggcctcgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ggatgcaaggtgtactggagaagtgtttgagttcaggggaagctgtttcaaaggcctcgg 693
Query: 185 aactaatagccacgcactcctcctgattccgtcattctcgatgctgcttgtggattcgaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aactaatagccacgcactcctcctgattccgtcattctcgatgctgcttgtggattcgaa 633
Query: 245 aactcttccattcagccactttcagaaagttccttgtgctcattaggcaaggcagctaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aactcttccattcagccactttcagaaagttccttgtgctcattaggcaaggcagctaat 573
Query: 305 tatggcttaaagctctgttagtctgaagaatatgcaagttttgtgtaacagtgaatcata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tatggcttaaagctctgttagtctgaagaatatgcaagttttgtgtaacagtgaatcata 513
Query: 365 aacattaccctcatataggaggcatcattatttgaggctaatttgacagtcttgaaacac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aacattaccctcatataggaggcatcattatttgaggctaatttgacagtcttgaaacac 453
Query: 425 tgtgcacaaattgtggctcattccacagaaacttggctcaattgttctctgtgaaggtct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgtgcacaaattgtggctcattccacagaaacttggctcaattgttctctgtgaaggtct 393
Query: 485 caggatccacttaaaggagttaataatgagtcttcagaatgctccaactggaagtgctcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 caggatccacttaaaggagttaataatgagtcttcagaatgctccaactggaagtgctcc 333
Query: 545 gtcctctgagcttttattcaatctatattgattcacactatagaattctgttgaaccttg 604
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtcctctgaggttttattcaatctatattgattcacactatagaattctgttgaaccttg 273
Query: 605 tgcattttcccctagaacctcaatatagattgctttaaatatctatttatgttaatttaa 664
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 272 tgcattttcccctagaacctcaatatagattgctttaaatatctatttgtgttaatttaa 213
Query: 665 gtccataa 672
||||||||
Sbjct: 212 gtccataa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_b23.g1 MSMg01no471_b23.g1 CHROMAT_FILE:
MSMg01no471_b23.g1 PHD_FILE: MSMg01no471_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:15 2005
(538 letters)
>mm_chr17_63302054_63302991
Length = 938
Score = 1011 bits (523), Expect = 0.0
Identities = 536/543 (98%), Gaps = 6/543 (1%)
Strand = Plus / Plus
Query: 1 gccttgtctagagagcgtgaccctgtctcaaatagaaaaataagagaaatggaaaaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gccttgtctagagagcgtgaccctgtctcaaatagaaaaataagagaaatggaaaaagaa 256
Query: 61 tcagcctaccagtagggtaatgtaggaataaactctgctgtagttattaatggatgatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcagcctaccagtagggtaatgtaggaataaactctgctgtagttattaatggatgatta 316
Query: 121 ttcaacaataaatagggaaattaaattagtgattccatacaataacatgagtgaatctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttcaacaataaatagggaaattaaattagtgattccatacaataacatgagtgaatctct 376
Query: 181 aaaacataacacttggctaaagaatcatcacacaaaactaccacttgtaaaagttctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaacataacacttggctaaagaatcatcacacaaaactaccacttgtaaaagttctcct 436
Query: 241 agaaccagcaaaacttcattgttgtgggagtgagattggggggtgggg-----cacagga 295
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 437 agaaccagcaaaacttcattgttgtgggagtgagattggggggtggggtggggcacagga 496
Query: 296 gctacagttaactggtagcgggcataggaaccattttagaggactgggtttgagttgtat 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gctacagttaactggtagcgggcataggaaccattttagaggactgggtttgagttgtat 556
Query: 356 gactgtatgcattttccaaacctatctaatgcttccttaagatttgtgcatttttactgt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gactgtatgcattttccaaacctatctaatgcttccttaagatttgtgcatttttactgt 616
Query: 416 atataagttttaccttaagagaaaaaaaaataggagactagaaagcaatgttgattccta 475
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 617 atataagttttaccttaagagaaaaaaaa-taggagactagaaagcaatgttgattccta 675
Query: 476 gttagtaataaacattttcggggagaaggatatgtagtgtttggcatgggctgcatcctc 535
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 676 gttagtaataaacattttcggggagaaggatatgtagtgattggcatgggctgcatcctc 735
Query: 536 gtg 538
|||
Sbjct: 736 gtg 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
