BAC Information

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BAC

Clone NameMSMg01-471M23
Chromosome17 (Build37)
Map Location 33,818,221 - 33,818,787
singlet/doubletsinglet
Overlap geneHnrpm
Upstream geneCyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1
Downstream geneMarch2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471M23.T7 (MSMg01no471_m23.b1)MSMg01-471M23.TJ (MSMg01no471_m23.g1)
ACCAG554490AG554491
length757759
length of high quality
(start - end)
571 (53 - 623)533 (82 - 614)
definitionCHROMAT_FILE: MSMg01no471_m23.b1 PHD_FILE: MSMg01no471_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:12 2005CHROMAT_FILE: MSMg01no471_m23.g1 PHD_FILE: MSMg01no471_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGGACTGCCAAGGCTACATAGACAAACCCTGTCTTAA
TTCCCTCTCATCAAAAAAAAACCCAAAATAAAAGTGCAACGTTATTTTTC
TTTGTTAATAAACATCTGCCAGGCATAGTAGAGAACACCTTTAATTCTAG
CACTGAGAGGTGATCTCTGAGTTTAGAGCAAACACAATCTAGTTTAAAGC
AAACATGATCTAAAGTGAGACCCTGCCTCAACAAATATAAATTGAGTACA
AAAAAATACTAAGACAAAAAGCGAGTTGGTATACGTTAAGAGCAAAATAT
GTAAGGACCAGTACTGTGGGTAACAAAGAGTTAAGAGTCATACATCCAAG
TCTGAATAATATATTCTCTCATTTTTAAGTGGAGGCTACTACTAAGTCAC
AAGTCTTTAAAAGAATTAGCACACAGCACACCAATAATAATTTTGAGGTG
TAAAAAGGGAGACCTATTTGCTCCTAGCCTTTCTGTATTGTATTCACTTG
GGAGGTTTTAAAACATTCCAACCATTGTCCATCACAGAAGAAACCTAAGC
ACTGAACTCACTACAAACTACCAAAGTGACAGTTCAGTTTTAACTAATAC
TGCAAAGCAGAGTAATATGAGAGTCCATTTGGGAAGCCCTTGAAGAGAGA
AAAAAAAGTAAAGCAAGCTTATCTTTGCAGGCTGGGATCTGTTTCTGTAG
TCATTAA
NNCCCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGATGACACCAGCCGCT
CTATCATCCGAAATGTCAAAGGCCCCGTTCGAGAGGGTGACGTGCTCACC
CTATTGGAGTCAGAAAGAGAAGCTCGAAGGTTGCGTTAATCTTGCAGCTG
GTGGGTAAGTGGCAACCCTTGGGAGGGACTTGTTAGGAGGTAAGAAAGGC
ACTCTATCTAATGCTTGGGTCTGTTTACAGGGTTCTGGATATCCACTACT
TAGCCCACGGAATGATCTGCAACTGTTAAATAAAGCATTTATATTAATTC
TTGTCTAGAAATTGGTTTTTCCAGCAGCGTCTTGGCTTTATAAAAACTCC
AGTGACCATGCACTCTGCTTTGAAAGCCCCCCTCCCCATAGGTGTTTGTT
CCTACTGCTTCCATCCACACAATACGAACTTAGTAGAAATACTTTTATTA
GGATGTTTCATGAAGTGAGTTGAGGGATATGGCATTACCCAGGCTTTGCC
TCACTCTTTCCCCTCAGCATCCTAACAAGCTAGAGGGAGCATCTTCTCAA
GGTGCCCTGCTGTGATTCAGACAGCAGAGAGAGTCTAGATGTAGTTAGCA
GCTCACAGAGGTAGAGGTTCCTCATTTGTCATTGCATTCCTTTGCAGTGG
GAGACCCTGTGGAAGACTGTCCCTAGAACCAAGAAAAGGGGTCCTATAGG
CAAAAAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_m23.b1 MSMg01no471_m23.b1 CHROMAT_FILE:
MSMg01no471_m23.b1 PHD_FILE: MSMg01no471_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:12 2005
         (571 letters)



>mm_chr17_33818017_33818987
          Length = 971

 Score = 1073 bits (555), Expect = 0.0
 Identities = 564/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggactgccaaggctacatagacaaaccctgtcttaattccctctcatcaaaa 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacagccaaggctacatagacaaaccctgtcttaattccctctcatcaaaa 264

                                                                       
Query: 65  aaaaacccaaaataaaagtgcaacgttatttttctttgttaataaacatctgccaggcat 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaacccaaaataaaagtgcaacattatttttctttgttaataaacatctgccaggcat 324

                                                                       
Query: 125 agtagagaacacctttaattctagcactgagaggtgatctctgagtttagagcaaacaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtagagaacacctttaattctagcactgagaggtgatctctgagtttagagcaaacaca 384

                                                                       
Query: 185 atctagtttaaagcaaacatgatctaaagtgagaccctgcctcaacaaatataaattgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctagtttaaagcaaacatgatctaaagtgagaccctgcctcaacaaatataaattgag 444

                                                                       
Query: 245 tacaaaaaaatactaagacaaaaagcgagttggtatacgttaagagcaaaatatgtaagg 304
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacaaaaagatactaagacaaaaagcgagttggtatacgttaagagcaaaatatgtaagg 504

                                                                       
Query: 305 accagtactgtgggtaacaaagagttaagagtcatacatccaagtctgaataatatattc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accagtactgtgggtaacaaagagttaagagtcatacatccaagtctgaataatatattc 564

                                                                       
Query: 365 tctcatttttaagtggaggctactactaagtcacaagtctttaaaagaattagcacacag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctcatttttaagtggaggctactactaagtcacaagtctttaaaagaattagcacacag 624

                                                                       
Query: 425 cacaccaataataattttgaggtgtaaaaagggagacctatttgctcctagcctttctgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacaccaataataattttgaggtgtaaaaagggagacctatttgctcctagcctttctgt 684

                                                                       
Query: 485 attgtattcacttgggaggttttaaaacattccaaccattgtccatcacagaagaaacct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attgtattcacttgggaggttttaaaacattccaaccattgtccatcacagaagaaacct 744

                                      
Query: 545 aagcactgaactcactacaaactacca 571
           |||||||||||||||||||||||||||
Sbjct: 745 aagcactgaactcactacaaactacca 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)