BAC Information

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BAC

Clone NameMSMg01-471P10
Chromosome17 (Build37)
Map Location 36,340,909 - 36,341,561
singlet/doubletsinglet
Overlap geneEG667827
Upstream geneLta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127
Downstream geneLOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471P10.T7 (MSMg01no471_p10.b1)MSMg01-471P10.TJ (MSMg01no471_p10.g1)
ACCAG554608AG554609
length730732
length of high quality
(start - end)
681 (50 - 730)650 (83 - 732)
definitionCHROMAT_FILE: MSMg01no471_p10.b1 PHD_FILE: MSMg01no471_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:25 2005CHROMAT_FILE: MSMg01no471_p10.g1 PHD_FILE: MSMg01no471_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:25 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGATTACTGCTATAGGTTTTCAGGAAGAATTATTTGGGGA
TCTAAATAATTAGATAATAATAATAAATAATAATAATTAGGGGCTGGACA
GATGTCCCAGTAATAAAGAGCACTGACTGCTCTTCCAGGAGACTCGCATT
CAATTCCTAGCACCTGCACATCAACCTACAACCATCTAATTCAAAACACA
GGGAATGTGAAGCCGTTTTCTGATCTCCACAACCATCAGATACCATCATG
GTGCTTAGACATATATACAGGAGGAAAAAGTCACACACATAATAAAAATG
AATAATATTTATTAATTAATGGAGAAGGGGAGGGAAAAAAAGGTAGAAAC
ATTGAAAATAACCACAACAGGAGAGATTATGGAAAATATTCTCCCTTAAG
GACTCAGCCAGATCAAGGGCCAAAGCCATTTTTCAGATACTCCTGTTTAG
CTGGTCTATCGTAATCCAGCTGATGACACTCACCATCTCTGCTCAGCCTG
TAGTAGAAGAGCAAGTCCAAGATCTCTATTGCTTCCCACAATCTGCATGC
CTGAAACACAACTCAAGAATGAATGAGACCCAGGGCTCCAGGAGGGCAGC
CTCAGGAGAAAGGGCATAGAAATAACACAGCTCATAGGAGCCTAAAACCA
ACATGCAATGGGACCCTGCCCTCCTCCTGG
NNNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTCAAGTCAGAATCA
GATAAGAATGTCTGATTCTTCAGTATCTCCTTTGAGACAGTGATAATTTC
ATATTTGCTTCAGAAATAGTCAAAAGAAAGACAGAAAAGTGCTAAATATT
GGAAAGGGAAAAGCCACAGTATGTATTGTTCCAAACAAGAGGAATATTTA
CTTAAAATCCAGTTGAGTCCCAGGAGAACTCCTGGACCTAAGAAACACTT
ATTGTTTCAGGACACAAAATCAGTGTAATAAAAGTAGCCTTCATTTTTGG
AACAATGCACTCTCAGAGGAGGACATTAGGAGCAACATGTCATTTAAAAT
AATGTTCAAAGAATTAAGAGTTCAGGGATCTATCAAAGCAAGGAAATTAT
AGAAGTCTATGTGGCAACCTTCAAGGTATTGTAGTAAGAAATCACGTAAG
AGGATGTCAGATGCTGGACCTAAAACCCTTGCTCCAGGACTGGCAGAGGT
AATATTGTGAAAATGGCCATTCTACCAAAGTAACCTACAGACTTAATGCA
CTACTATTAGACTCATTAATTTGATATGTTTAGTAAATAATTTAAAAGAC
CACTCAGAGCCAGTTTCAGGAGTAAGAACTGGAGGTGTTTCAATCCCAGC
CTCAAATTATACTGCAGAGCTCTAGTGACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_p10.g1 MSMg01no471_p10.g1 CHROMAT_FILE:
MSMg01no471_p10.g1 PHD_FILE: MSMg01no471_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:25 2005
         (650 letters)



>mm_chr17_36340712_36341761
          Length = 1050

 Score =  710 bits (367), Expect = 0.0
 Identities = 587/665 (88%), Gaps = 27/665 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtctcaagtcagaatcagataagaatgtctgattcttcag-tatctcctttgagacagt 59
           ||||| ||||||||||||||  || ||| |  ||||| | | ||||||| |||||||| |
Sbjct: 198 tgtctgaagtcagaatcagacgaggatgcc--attct-ctggtatctcccttgagacaat 254

                                                                       
Query: 60  gataatttcatatttgcttcagaaat-agtcaaaagaaagacagaaaagtgctaaatatt 118
           ||||||||||||||||||||| |||| || ||||||| || || ||||| | | ||||| 
Sbjct: 255 gataatttcatatttgcttca-aaattagacaaaagagagccacaaaagggatcaatata 313

                                                                       
Query: 119 ggaaagg--gaaaagccacagtatgtattgttccaaacaagaggaatatttacttaaaat 176
           |||||||  |||  |||||| |||| ||| ||||||||||||||||| ||||  ||||| 
Sbjct: 314 ggaaaggatgaa--gccacattatgaattcttccaaacaagaggaatctttaaataaaaa 371

                                                                       
Query: 177 c-cagttgagtcc-caggagaactcctggacctaagaaacacttattgtttc-aggacac 233
           | |||||||| || || || ||| |||||||||||||||||||||||||||  |||||||
Sbjct: 372 ctcagttgag-ccgcacgaaaacgcctggacctaagaaacacttattgtttagaggacac 430

                                                                       
Query: 234 aaaa-tcagtgtaataaaa--gtagccttcatttttggaacaatgcactctcagaggagg 290
           |||| ||| || || ||||  |||||||||| || |  |||| |||||||||||||||||
Sbjct: 431 aaaaatcaatgaaaaaaaaaagtagccttcacttgtacaacagtgcactctcagaggagg 490

                                                                       
Query: 291 acattaggagcaacatgtcatttaaaataa-tgttcaaagaattaagagttcagggatct 349
           |||||||||| |||||| |||| ||||||| | | |||||||||||||||||||||||||
Sbjct: 491 acattaggagaaacatgccattcaaaataactct-caaagaattaagagttcagggatct 549

                                                                       
Query: 350 atcaaagcaaggaaattatagaagtcta--tgtggcaaccttcaaggtattgtagtaaga 407
           |||| | ||||||||| |||||||||||  | || |||||||||||||  ||||||| ||
Sbjct: 550 atcagatcaaggaaatgatagaagtctacct-tg-caaccttcaaggtgctgtagtagga 607

                                                                       
Query: 408 aatcacgtaagaggatgtcagatgctggacctaaaacccttgctccaggactggcagagg 467
           |||||| || ||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 608 aatcacctaggaggatgtcagatgctggacctacagcccttgctccaggactggcagagg 667

                                                                       
Query: 468 taatattgtgaaaatggccattctaccaaagtaacctacagacttaatgcactactatta 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 taatattgtgaaaatggccattctaccaaagtaacctacagacttaatgcactactatta 727

                                                                       
Query: 528 gactc--attaatttgatatgtttagtaaataatttaaaagaccactcagagccagtttc 585
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gactctcattaatttgatatgtttagtaaataatttaaaagaccactcagagccagtttc 787

                                                                       
Query: 586 aggagtaagaactggaggtgtttcaatcccagcctcaaattatactgcagagctctagtg 645
           |||||||||||||||||||||||||  ||||||||||| |||||||||||||||||| ||
Sbjct: 788 aggagtaagaactggaggtgtttca--cccagcctcaagttatactgcagagctctaatg 845

                
Query: 646 acagg 650
           |||||
Sbjct: 846 acagg 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)