BAC Information

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BAC

Clone NameMSMg01-472I03
Chromosome17 (Build37)
Map Location 15,245,018 - 15,410,916
singlet/doubletdoublet
Overlap geneC330048F19
Upstream geneDact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3
Downstream geneLOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472I03.T7 (MSMg01no472_i03.b1)MSMg01-472I03.TJ (MSMg01no472_i03.g1)
ACCAG555025AG555026
length758797
length of high quality
(start - end)
542 (44 - 585)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no472_i03.b1 PHD_FILE: MSMg01no472_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:10 2005CHROMAT_FILE: MSMg01no472_i03.g1 PHD_FILE: MSMg01no472_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,410,406 - 15,410,916)(15,245,018 - 15,245,261)
sequence
CCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTACTATTTCCCAAAGCTGGGGATCAAGTGTTCAAACACATACTC
TGTAGAGAACATTTAACATCCAAACCACATAACCTTTGAATTAGTGAGCC
AAAATAAATCTTGCTTAAACTGTCTCTTGCAAGTATTTGTCATGGTGTCA
AAAAGCAACTGTGTATATCTATAAATCTTACACACATACACAGACATACA
CATGCACACATACATGCACATGCAAGCATAATCTGTAGGCTAAAGGTCAT
AAAATGCTGTTTAAAACATTTTAAGGAGGAAATAAGTGGGGAGGACTATT
TATTATACTATGAATGAGGACACTATTTCTCTGACTGAGACATTTGAGAT
GGTAAACACATCAGCTCACTCCACTTCATATTTGACACTGTTCCAGTTGA
AATTCTTGTTAGACTTTTGGTTATGTAGCCGACTCAAAAATGGTCAAAAC
TAGTTCGAGAAGACTAAATTTTTTTTAAATCACCACTCAGTTTTAAAAGC
TATGCTAATTAAAGAATTCTTATATTGACACAGACAGATACATAAATCAG
CGGGACAAAACAGATAACCCAAAACTGACCCAACAGTTCAAAGAGAGTTT
GTTAAATAAGATAAACCGCTTTTTAAAAGGGCTTCTGGAAAAGTGAAATT
AAATCTTTCAAAAAAAACAAAAAATTTTGAAAAAAATCCTGGAACTTCTT
AAAATAAA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAAGATGGCAGCCGTGCAACTTTCC
TGTCCTGATGAAATATGCTCTTCCTTTCCTCTGTACCTAGCTGATGCTGC
AGCTGTCCACCTGTGTGTGCTGTGCTGCACTGTGCCCACCTGCCCATGGG
CATCCAGTGATGCTGATATAGATGACAATCAGCTTGCTGGGGTGGTTGGT
ACTGGGGAACGTCGTCTGAGCTCCGTTGCAGGGAACTGACCATTTCAAGC
ACCTTTTCCTTGCGCCTGTTTCTGAGGCACTGACTTTTAGGGTCAGTCTT
CCCACATGAGTGTCTCATCACCAGGGTGTCCTTATCTAATGGCACAACCG
CATTCTGACAGCCACTGTGTATGTACCCAGGTCATGCAAGTTTCGCGCAC
TGAAAGCTATCCGTCATCTTCCTATATCTCTGCCCCCCCCTCACTCACAT
TTTATTCTTTGCTCCCCTTTACTTCCCCTCTAAGCTCCCCCTACGACTTC
TCTTTCACCCCACGAATACCTGAATCTTTTCTTCACCTCACTCCCCCTCC
ACCATTAATCCCCTCCCCTTACCTTCCCACCCCCCTCCCCTATTTTTCAT
TTTCCATTTACCTACCTCTTATTTTTCCTTTATTATTCATTCGCCCCCCC
CCCCACTATTCCTACCACCTTTATTTTATTTTCCTCCCTCCCCCCTTTTC
CCTCTTTTTCCCCTCCTCTGTTCCATTCCCAATAATATTTCTCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_i03.b1 MSMg01no472_i03.b1 CHROMAT_FILE:
MSMg01no472_i03.b1 PHD_FILE: MSMg01no472_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:10 2005
         (542 letters)



>mm_chr17_15409975_15410916
          Length = 942

 Score =  965 bits (499), Expect = 0.0
 Identities = 508/511 (99%)
 Strand = Plus / Minus

                                                                       
Query: 32  gggatcaagtgttcaaacacatactctgtagagaacatttaacatccaaaccacataacc 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 gggatcaagtgttcaaacacatactctgtagagaacatttaacatccaaaccacataacc 883

                                                                       
Query: 92  tttgaattagtgagccaaaataaatcttgcttaaactgtctcttgcaagtatttgtcatg 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 tttgaattagtgagccaaaataaatcttgcttaaactgtctcttgcaagtatttgtcatg 823

                                                                       
Query: 152 gtgtcaaaaagcaactgtgtatatctataaatcttacacacatacacagacatacacatg 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gtgtcaaaaagcaactgtgtatatctataaatcttacacacatacacagacatacacatg 763

                                                                       
Query: 212 cacacatacatgcacatgcaagcataatctgtaggctaaaggtcataaaatgctgtttaa 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cacacatacatgcacatgcaagcataatctgtaggctaaaggtcataaaatgctgtttaa 703

                                                                       
Query: 272 aacattttaaggaggaaataagtggggaggactatttattatactatgaatgaggacact 331
           |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 aacaatttagggaggaaataagtggggaggactatttattatactatgaatgaggacact 643

                                                                       
Query: 332 atttctctgactgagacatttgagatggtaaacacatcagctcactccacttcatatttg 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atttctctgactgagacatttgagatggtaaacacatcagctcactccacttcatatttg 583

                                                                       
Query: 392 acactgttccagttgaaattcttgttagacttttggttatgtagccgactcaaaaatggt 451
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 582 acactgttccagttgaaattcttgttagacatttggttatgtagccgactcaaaaatggt 523

                                                                       
Query: 452 caaaactagttcgagaagactaaattttttttaaatcaccactcagttttaaaagctatg 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 caaaactagttcgagaagactaaattttttttaaatcaccactcagttttaaaagctatg 463

                                          
Query: 512 ctaattaaagaattcttatattgacacagac 542
           |||||||||||||||||||||||||||||||
Sbjct: 462 ctaattaaagaattcttatattgacacagac 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no472_i03.g1 MSMg01no472_i03.g1 CHROMAT_FILE:
MSMg01no472_i03.g1 PHD_FILE: MSMg01no472_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:10 2005
         (244 letters)



>mm_chr17_15244818_15245461
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagatggcagccgtgcaactttcctgtcctgatgaaatatgctcttcctttcctctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataagatggcagccgtgcaactttcctgtcctgatgaaatatgctcttcctttcctctgt 260

                                                                       
Query: 61  acctagctgatgctgcagctgtccacctgtgtgtgctgtgctgcactgtgcccacctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctagctgatgctgcagctgtccacctgtgtgtgctgtgctgcactgtgcccacctgcc 320

                                                                       
Query: 121 catgggcatccagtgatgctgatatagatgacaatcagcttgctggggtggttggtactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 catgggcatccagtgatgctgatatagatgacaatcagcttgctggggtggttgggactg 380

                                                                       
Query: 181 gggaacgtcgtctgagctccgttgcagggaactgaccatttcaagcaccttttccttgcg 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaatgtcgtctgagctccgttgcagggaactgaccatttcaagcaccttttccttgcg 440

               
Query: 241 cctg 244
           ||||
Sbjct: 441 cctg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)