BAC Information

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BAC

Clone NameMSMg01-472K09
Chromosome17 (Build37)
Map Location 88,558,499 - 88,558,996
singlet/doubletsinglet
Overlap genenone
Upstream geneMcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
Downstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472K09.T7 (MSMg01no472_k09.b1)MSMg01-472K09.TJ (MSMg01no472_k09.g1)
ACCAG555132AG555133
length750772
length of high quality
(start - end)
502 (71 - 572)497 (81 - 577)
definitionCHROMAT_FILE: MSMg01no472_k09.b1 PHD_FILE: MSMg01no472_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:21 2005CHROMAT_FILE: MSMg01no472_k09.g1 PHD_FILE: MSMg01no472_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGATTTCCAGGCCTACAGAGTAAGAAACTGTCTCAAAAAC
ACTAAATACATAAATAAGTTATGGTCAGTGTGTCATGACACAAAGCATAA
GATGTAATGGTAACAAGATACAATTTGCAAAACACATGAAACTTAAGAAG
GAAGACTAAAGTGTGGATACTTCGTTCCTTCTTAGAATGGGGAACAAAAT
ACCCATGGAAGGAGTCACAGAGTCAAAGTTTGGAGCTGAGATGGAAGGAA
GGAGCACCCAGAGACTGCCTCACCCAGGGGATCCGTCCCATAAACAACCA
CCAAACCCAGACACTATTGCATATGCCAGCAAGATTGCTGACAAGATCTT
GATATACCTGTCCCTTGTGAGGCTATACCAGTGCCTGGCAAACACAGAAG
TAGATGTGCACAGCCATCTATTGGATGGAACACAGGGCCCCCAATGAAGG
AGCTAGAGAAAGTACCTGAGGAGATAAAGGGGTCTGCAAGCCTATAGGAG
GAACAACAATATGAACTAACCAGTACCCCCCAGAGCTTGTGTCTCTAGTT
GCATATGTACCAGACGATGGCCCTATAGCCCATCCATGGAAGGAGGGAAA
CCCTCGCGCTTTTTCAAGAAAAATGCCCCCGCAACGGGGGAATGTCTTGG
CCCTTAATCATTTATTGGGCGGCGCTTGTTATCCTCTTTTACTTTCTATT

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAATGTTATTTACATCGG
CGGCTGCTGTAACGGATTTGCGTAATTCATGCAGTAATAATGATACGGGG
AGTGCGGGTGTCTGGGGCCACAGCAAACACACCAGACCGATGAGGGTTTT
GCTACAAATGTCATCCTCTTTCAGTCGGTGTGTGTTTCAGTAACTGCAGG
GATGATTGTTTTTGATGCTGACATCAAATGGCAAGAGCCAAAGCTCTTCC
TGGATGTGAGAAGCAGCCAAATGTTGTCTGGAATCCTCAACACTCCCCGC
CCCCATTCTGTGCACCGGAGCAGGACAAGAGAGAGAAGGCGAAGCCCTTT
AATGGGCTACAAAACCTCCAGACACATCTCTCTCCTTTACTTTCTCAGCA
TTTCTAAGTTTCCAGTGATACAAAAGCCAGCATCCCTGGCCCAGTCTCCA
TCTCGGCTGGGGGAGCACAGTTTTTCCGCACTAATCTGGGCAGGCTGCCA
CTTGGGGGCCTGGATAATTCCCTTGTAATGCAAAGAAAACCCAATTCACT
CACCTTTTCCCAGATCCTGGGGGAGCTGCTTTCAGTCCGGTTACAATCAA
GAAAAGCCCCTTGTTTTAAAAACTCCAACGGAGCCTTTGAGATAACTCCT
TAAATAAGGTGCTTTCTCATGGCTCTCCCCAGATAAAATGGCTCCATTTT
CCTTCCTGGGTTGAAGGAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_k09.g1 MSMg01no472_k09.g1 CHROMAT_FILE:
MSMg01no472_k09.g1 PHD_FILE: MSMg01no472_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:21 2005
         (497 letters)



>mm_chr17_88558299_88559196
          Length = 898

 Score =  932 bits (482), Expect = 0.0
 Identities = 494/498 (99%), Gaps = 1/498 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaatgttatttacatcggcggctgctgtaacggatttgcgtaattcatgcagtaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaatgttatttacatcggcggctgctgtaacggatttgcgtaattcatgcagtaataa 260

                                                                       
Query: 61  tgatacggggagtgcgggtgtctggggccacagcaaacacaccagaccgatgagggtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatacggggagtgcgggtgtctggggccacagcaaacacaccagaccgatgagggtttt 320

                                                                       
Query: 121 gctacaaatgtcatcctctttcagtcggtgtgtgtttcagtaactgcagggatgattgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctacaaatgtcatcctctttcagtcggtgtgtgtttcagtaactgcagggatgattgtt 380

                                                                       
Query: 181 tttgatgctgacatcaaatggcaagagccaaagctcttcctggatgtgagaagcagccaa 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tttgatgctgacatcaaatggcaagagccaaagctcttcctggatgcgagaagcagccaa 440

                                                                       
Query: 241 atgttgtctggaatcctcaacactccccgccccca-ttctgtgcaccggagcaggacaag 299
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 atggtgtctggaatcctcaacactccccgcccccaattctgtgcaccggagcaggacaag 500

                                                                       
Query: 300 agagagaaggcgaagccctttaatgggctacaaaacctccagacacatctctctccttta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagagaaggcgaagccctttaatgggctacaaaacctccagacacatctctctccttta 560

                                                                       
Query: 360 ctttctcagcatttctaagtttccagtgatacaaaagccagcatccctggcccagtctcc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttctcagcatttctaagtttccagtgatacaaaagccagcatccctggcccagtctcc 620

                                                                       
Query: 420 atctcggctgggggagcacagtttttccgcactaatctgggcaggctgccacttgggggc 479
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctcggctgggggcgcacagtttttccgcactaatctgggcaggctgccacttgggggc 680

                             
Query: 480 ctggataattcccttgta 497
           ||||||||||||||||||
Sbjct: 681 ctggataattcccttgta 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 898
Length adjustment: 10
Effective length of query: 487
Effective length of database: 888
Effective search space:   432456
Effective search space used:   432456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)