BAC Information

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BAC

Clone NameMSMg01-472L10
Chromosome17 (Build37)
Map Location 72,592,801 - 72,593,028
singlet/doubletsinglet
Overlap geneAlk
Upstream geneLpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4
Downstream geneYpel5, Lbh, Lycat, LOC668709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472L10.T7 (MSMg01no472_l10.b1)MSMg01-472L10.TJ (MSMg01no472_l10.g1)
ACCAG555182AG555183
length813787
length of high quality
(start - end)
66 (184 - 249)228 (77 - 304)
definitionCHROMAT_FILE: MSMg01no472_l10.b1 PHD_FILE: MSMg01no472_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:26 2005CHROMAT_FILE: MSMg01no472_l10.g1 PHD_FILE: MSMg01no472_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCTATAATTTGCGGGCGGNAAANGAANCACTTTTCGAAGAGGATCCG
CGGAATTCTGGTTTTCCAACACTGGGGAGANAAAGTGCATGAGGGCCTGA
GTTGGACCCCCATCCCTCTAGAACCCATGTCAAAAAGCTGGTCCTAGCAG
CATAAGAGCATGTGTTAATCTCAGGACCGGGGAGGAAGAAACAAGGATCT
CTAGCGCTTGCATTAAGAAGACACCTGATGGTGCCCTCTGGCCTCTAAGC
TCTTGATAAGCACACATCATTGCCCACATACACATGATTATACACATGAA
CACACATGTGAGAATATTTTTCTCTTCTTACCACACACACTCACACCCTC
CCTCACTCTGTATTTTTTGTACACTGCTTGCTCCATCATAAGTGTCATTA
TTTGGATGAGTGTACCTTGTTGACAACAGTTGTGACTTCTCCTGCGTTGA
CCACTTTTCTCTTTTTTCTGCCGTGTCTCTCATCTCCTCACTTTCTCTCG
GTTTATGCTTTTTTATGGTTCCTTAGTTTCTTGCTTTTTTTCCCTCGTTC
CTTTTCTTTCTTCTTCACTCCTCGCATTCTCGCTTTTCTTAACCTCTGTC
GGCCCCGTTTTATCACCATTATTTCTCCTCATCTGTTTTCTCTCCGCCTC
TTCTCATATTTATTTCTTCGCTCTCTCACTCTCTCCTTGGGTACTTTCAC
CCAAACCGTCTTTTCTTTTTTTCCGCTTTCGGTGCTGTCTTCTATTTCTC
CTATTGATAGATCCTCCCACATTTGAACTTTTTCTTCTTTTTCTCCCCCC
TCCCACTCCTTTT
NNCCGATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCGTGGGTAGCATCCTTTCGGGG
GTGGGGGGAGAGCATATTATTCCAAGTGTCAGTTGTGAGAGGCATTGCTC
AGTGGTCTCTGTGTATGCCACAAATGCTCTGCAGGGAAGAGCCAAGTTGC
AAACGGTTCCCCAGAAGTGCATCTCTCTACAGTGATCTCATAGCCTCTGA
TAATAGGAAGACTTCCTCTAGGTGGGTGGGATGCAGGTTAGGAAAGAAGA
TGAGGGAAGGCTAAGATTTTATTTTTAAGATGGATCACTCTCATCTGTAA
GCTGACTTGTTGTATATCTTCTCAGTGTGGTTCTATGAGAAAAACAATCT
CTGTTCATTGATGACACCCTGTTCTCTTCTTTTATATGATCCTATGTGTG
CCATCTCCTTTCTAATATCTGCCATGTTATGCCTGATCCCTGCATATGCT
CTTGTGAAGTAATAATACACTCTTACACTTTCTCTCTAACGTTAATAACC
CCCCTTTTTTTCCCTATTATTTATTCTCATCGCTTTTTTTTCTTTTTCTA
TTAGTACTATACCTTTCTTCTCCTTATTTTTATTTCTTCTCTTATCTTTT
CACTCCGCTTACTCCCTTCTTTTCTTTTCTTCTCCCGATTTTTTCCCCGT
CTTTTCTCCCATTACTGGTATCTNCTTTTCTCCTTATTTTCTCCCTTTTT
TTCTTTACTCTTCTTTTTTTTCTTCTTATATTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_l10.g1 MSMg01no472_l10.g1 CHROMAT_FILE:
MSMg01no472_l10.g1 PHD_FILE: MSMg01no472_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:26 2005
         (228 letters)



>mm_chr17_72592601_72593228
          Length = 628

 Score =  402 bits (208), Expect = e-117
 Identities = 223/228 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcgtgggtagcatcctttcgggggtggggggagagcatattattccaagtgtcagttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcgtgggtagcatcctttcgggggtggggggagagcatattattccaagtgtcagttgt 260

                                                                       
Query: 61  gagaggcattgctcagtggtctctgtgtatgccacaaatgctctgcagggaagagccaag 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaggcattgctcagtggtctccgtgtatgccacaaatgctctgcagggaagagccaag 320

                                                                       
Query: 121 ttgcaaacggttccccagaagtgcatctctctacagtgatctcatagcctctgataatag 180
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct: 321 ttgcaaacggttccccagaggtgcatctctctacagtgatctcatagcctctgagaagag 380

                                                           
Query: 181 gaagacttcctctaggtgggtgggatgcaggttaggaaagaagatgag 228
           |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gaagacttcctctaggtgggtgggttgcaggttaggaaagaagatgag 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)