ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCCGCGGA
ATTCNATTTCTTGCCTAGAGATGTGGCGACTTATCATGGTTGCTGTTCTG
ACCTCAAAATAACCAGAGGTGAGATGGGGACTTTGTGCGTTCTCCTCTTT
GATCCATGCCTGTGAGGATGGCAGAGTACAGGTGCGAGGAGTCCTGCACC
TGCAAGGGCTGTAACGAAGGGCTGCATGGTCAGCCAGCAGGGCTTGGGCT
GGCTGGTGAGGTAGTTAAGGAAATTGTCGGGATAATCCTCTTCAGGTAAG
GAACTGGTGCAGTACAGTTGCTCTTTATATTGATAACTAGTATGTATTGG
TTTCGAGTGAGAGCTAAAAATCAAGAGCGGCCATTGAGAATTCTTCCAAA
GTTTACTGTGATAATAAAAGTAACTAAAACTTCTTTTTTGGTTTCTTTTC
AACTTAGACAAGATTGTAAGGAAAGCTGGCAGTCTAGCAGATGTTTATGT
TTATGAAGTGGGTCCTGGGCCCGGGGGAATCACAAGATCCATCCTGAATG
CCAACGTTGCTGAGCTTCTGGTGGTTGAAAAGGACACTCGCTTTATCCCA
GGGTTACCGGTGAGATGCTTAAAATGGGTCTTTCTTTCCACAGGCCCCAA
CCAGGTGTTGTTTTGGTTCTTGATTCCAAAGTCCCCATGTTGACCATGGA
ATGGGTTTGCTTTATCTTCAACTTGCCGCTCTTCCGTGTCTCTCTCCGCT
CCTTATTATC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTCCTAATTTCATATGACTTTGGA
GTCATAGGAACTCTGGAAATGTTAGGTTTTGGAGCCTGTGGAAGACTAAT
TGAAGTGAGAGGACTCCATCAATTACCTGTGGATAAGTCACCATCCATGT
CGGGGACAGACTTTTGGGTGGTATTACTGCTTTGGGGGGAGGGTCACCTG
CGTTTCTGTGAGTAGTCCCTCACATATGTTCCGTAAACACACTCAACTGT
AGGTTGAAGGTTTTGTGGTGTTTTTGTGTCCCACTCCTTCCACTTGAGTT
GAGGCTTTGGTTGTTTACATAACATGGCTGGTTCAGGCTCCATGTCCCCC
ATTACTAGGAGTCTTTGCTAGGGTTACTCTTGTAGATTCTTTGGAGTTTC
CATTACACTAGGTTTCCACTGTGTCCCTGATATGCCCCCCCCCCAATTCC
AGTCTTTTTTTCCAGTCTTTTCTCCCAGCCTTTTCTCCCTTCCTTTCTCT
GCCACAAGATTCTTTCTTGTTTTCTATGTTACCTGTCCCCCGTCTATCTT
CTAATTTCTATTTTTCCCTTCCCAGTTAAAATCTTTGCTTCCCTCTTTTA
CCCTCTCTCGGAATATTCTTTTCTATTTTTTTCCCCGTATTCGATGTCGT
CCCTATACACACTTACTCCTTCCCTAACCCATATTCTAATTCACTGTCGA
CTTTCTCTTTCTTTTTGCCCCTTCTTCTCTTCCTACTT

Query= MSMg01no473_f18.b1 MSMg01no473_f18.b1 CHROMAT_FILE:
MSMg01no473_f18.b1 PHD_FILE: MSMg01no473_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:24 2005
         (242 letters)



>mm_chr17_3554773_3555414
          Length = 642

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   atattgataactagtatgtattggtttcgagtgagagctaaaaatcaagagcggccattg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atattgataactagtatgtattggtttcgagtgagagctaaaaatcaagagcggccattg 383

                                                                       
Query: 62  agaattcttccaaagtttactgtgataataaaagtaactaaaacttcttttttggtttct 121
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agaattcttccgaagtttactgtgataataaaagtaactaaaacttcttttttggtttct 323

                                                                       
Query: 122 tttcaacttagacaagattgtaaggaaagctggcagtctagcagatgtttatgtttatga 181
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttaaacttagacaagattgtaaggaaagctggcagtctagcagatgtttatgtttatga 263

                                                                       
Query: 182 agtgggtcctgggcccgggggaatcacaagatccatcctgaatgccaacgttgctgagct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtgggtcctgggcccgggggaatcacaagatccatcctgaatgccaacgttgctgagct 203

            
Query: 242 t 242
           |
Sbjct: 202 t 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no473_f18.g1 MSMg01no473_f18.g1 CHROMAT_FILE:
MSMg01no473_f18.g1 PHD_FILE: MSMg01no473_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:24 2005
         (246 letters)



>mm_chr17_3386752_3387397
          Length = 646

 Score =  400 bits (207), Expect = e-116
 Identities = 235/245 (95%), Gaps = 4/245 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcctaatttcatatgactttggagtcataggaactctggaaatgttaggttttggagc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tgtcctaatttcatatgactttggagtcttaggaactctggaaatgttaggttttggagc 260

                                                                       
Query: 61  ctgtggaagactaattgaagtgagaggactccatcaattacctgtggataagtcaccatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtggaagactaattgaagtgagaggactccatcaattacctgtggataagtcaccatc 320

                                                                       
Query: 121 ca--tgtcggggacagacttttgggtggtattactgctttggggggagggtcacctgcgt 178
           ||  | | |||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct: 321 cacat-t-ggggacagacttttgggtggtattgctgctttggggggagggtcatctgtgt 378

                                                                       
Query: 179 ttctgtgagtagtccctcacatatgttccgtaaacacactcaactgtaggttgaaggttt 238
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 379 ttctgtgagtagtccctcacatatattccataaacacactcaactgtaggttgaaggttt 438

                
Query: 239 tgtgg 243
           |||||
Sbjct: 439 tgtgg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)