BAC Information

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BAC

Clone NameMSMg01-473O03
Chromosome17 (Build37)
Map Location 35,706,787 - 35,872,611
singlet/doubletdoublet
Overlap geneLOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663
Upstream geneNotch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik
Downstream geneIer3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473O03.T7 (MSMg01no473_o03.b1)MSMg01-473O03.TJ (MSMg01no473_o03.g1)
ACCAG556077AG556078
length782800
length of high quality
(start - end)		450 (69 - 518)366 (74 - 439)
definitionCHROMAT_FILE: MSMg01no473_o03.b1 PHD_FILE: MSMg01no473_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:08 2005CHROMAT_FILE: MSMg01no473_o03.g1 PHD_FILE: MSMg01no473_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,872,269 - 35,872,611)(35,706,787 - 35,707,132)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGATTATCTTGCCTGGTGGCAAGTACCTTTACCCAAGACATCTGGAT
GACCCTCAGGAGCTAATTAAATAGTGCTTAAGTTGCCTTAAGAATACTTA
GCTTCTACTCCAGTGCCCCAAGCATAAGCAGGTCACTAATGTGTGCTAAA
TCGTTCCTTTCTTTTTTTTTTCTTTAAAGACTTATTTATTATTATATGTA
AGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGTGTCAGATCTCA
TTATGGATGATTGTAAGCCACCATGTGGTTGCTGGGATTTGAACTCGGGA
CCTTCAGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCC
CAAATCGTTCCTTTCTTTGCTGTGAACTTCTCTCTACTAAATCTTGAGTT
GAGTGAAAAGGGCAATGTGCCTTATCCTGGGGAAATAGCTGGCTATCTTA
TGGGAGTCTAAAAAGGGGGAGAGATGACTTCCGAGTGTCAGCCAGGCCTC
TTCTGGGCATACGTGGAAAAATAAAGACATCTGTCAAGAAGTTTATGTTC
AGAATAAGACTGAGGGAAAGAACACGTCCCGCTTTGTTTTGTGCTTCTAT
GGGGCTGACGATGGATCTCATCTGGGATAATTCCTGTTTGGTTTTCACCC
CNCCCTAACCCCATTAAATATAGTGGGCTGCTACTTGACTTTCCTCTCAT
CTTTACCAATGCTTGGTAGAGAGAAGACTTTC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTCTGACAATTCCTCATAAGCCATG
TTTCCCCTAACCAACCACACTCTGCCGCCTCAACCTCCTCACGCACCTCT
CTCCCCTCCTTGGACTCTTGAGTTTTCTCGGTCCTAGGGAAAAAGTAGGG
GACTTTTTTAGCTTCTCTTTCCCATAGGCCCAAGGTCATATCAGGCATGC
AAGCTCATTTCTCTCTCTAGTTGCCCACCACGCTATAGTCACTCCTATGT
GTATTAAATTTTTATTTATTTATTTATTTGTTTATTTATTTATTTATTTA
TTTATTTATTTATTTATTCGAGACAGGGTTTCTCTGTATGGNCCTGGCTG
TCCTGGAACTCACTTTGTAGACCAGGCTGGGCTCGAACTCAGAAATCCAC
CTGCCTCTGGCTCCCGAGTGCTGGGATTAAAGGCGTGTGGCCCCATGCCT
CTGGATTTATTTACTTATTGTGTGGGAGGACAGTGGTGGTCTCTCCGAGT
CAGCGTAGAGATGGGGGTCAGAACCCTTTATGGATGGGTGTGGGTTCTCT
TGGTGGTTGTCAGGTGATTGAGTTTGTGGTCCTGCAGAGAGGGGGGTCTG
GGATTTGTTTTGGGGGGTGGTTGTTTTTTCTGTCGTGGCGTTTGCGCCGG
TTCTTTCTTATTTGTCTGCTCGGTATTACATAGCTCTGTTTGTTCGTGCG
GTGTATTCGTTATCTTCTCTCTGTTGTGTGCGGAGCAGCTCGGTAAGCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_o03.b1 MSMg01no473_o03.b1 CHROMAT_FILE:
MSMg01no473_o03.b1 PHD_FILE: MSMg01no473_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:08 2005
         (450 letters)



>mm_chr17_35872269_35873118
          Length = 850

 Score =  617 bits (319), Expect = 0.0
 Identities = 337/343 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtggcaagtacctttacccaagacatctggatgaccctcaggagctaattaaatagtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 343 gtggcaagtacctttacccaagacatctggatgaccctcaggagctatttaaatagtgct 284

                                                                       
Query: 61  taagttgccttaagaatacttagcttctactccagtgccccaagcataagcaggtcacta 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 283 taagttgccttaagaatacttagcttctactccaatgccccaagcataagcaggtcacta 224

                                                                       
Query: 121 atgtgtgctaaatcgttcctttcttttttttttctttaaagacttatttattattatatg 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 223 atctgtgctaaatcgttcctttcttttttttttctttaaagacttatttattattatatc 164

                                                                       
Query: 181 taagtacactgtagctgtcttcagacacaccagaagagggtgtcagatctcattatggat 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 taagtatactgtagctgtcttcagacacaccagaagagggtgtcagatctcattatggat 104

                                                                       
Query: 241 gattgtaagccaccatgtggttgctgggatttgaactcgggaccttcagaagagcagtca 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ggttgtaagccaccatgtggttgctgggatttgaactcgggaccttcagaagagcagtca 44

                                                      
Query: 301 gtgctcttaaccactgagccatctctccagcccaaatcgttcc 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  gtgctcttaaccactgagccatctctccagcccaaatcgttcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no473_o03.g1 MSMg01no473_o03.g1 CHROMAT_FILE:
MSMg01no473_o03.g1 PHD_FILE: MSMg01no473_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:08 2005
         (366 letters)



>mm_chr17_35706587_35707355
          Length = 769

 Score =  503 bits (260), Expect = e-147
 Identities = 332/369 (89%), Gaps = 26/369 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttctgacaattcctcataagccatgtttcccctaaccaaccacact---ctgccgcct 57
           |||||| |||||||||||||||||| ||||||||||||||| ||||||   |||||||||
Sbjct: 201 tgttctcacaattcctcataagccacgtttcccctaaccaatcacacttctctgccgcct 260

                                                                       
Query: 58  caacctcctcacgcacctctctcccctccttggactcttgagttttctcggtcctaggga 117
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 caacctcctcacgcacctctctcccctccttggactcttgagttttctcagtcctaggga 320

                                                                       
Query: 118 aaaagtaggggacttttttagcttctctttcccataggcccaaggtcatatcaggcatgc 177
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 aaaagtaggggacttttttagcttctctttcccacaggcccaaggtcatatcaggcatgc 380

                                                                       
Query: 178 aagctcatttctctctctagttgcccaccacgctatagtcactcctatgtgtattaaatt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 381 aagctcatttctctctctagttgcccaccacgctatagtcactcctatgtgtattaaa-- 438

                                                                       
Query: 238 tttatttatttatttatttgtttatttatttatttatttatttatttatttatttattcg 297
              |   |   |   |       ||  |||||||| ||| ||| ||||||||||||||||
Sbjct: 439 ---a---a---a---a-------at--atttatttgtttgtttgtttatttatttattcg 477

                                                                       
Query: 298 agacagggtttctctgtatggncctggctgtcctggaactcactttgtagaccaggctgg 357
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agacagggtttctctgtatggccctggctgtcctggaactcactttgtagaccaggctgg 537

                    
Query: 358 gctcgaact 366
            || |||||
Sbjct: 538 ccttgaact 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 769
Length adjustment: 9
Effective length of query: 357
Effective length of database: 760
Effective search space:   271320
Effective search space used:   271320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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