BAC Information

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BAC

Clone NameMSMg01-474A17
Chromosome17 (Build37)
Map Location 57,200,669 - 57,201,181
singlet/doubletsinglet
Overlap genenone
Upstream geneChaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23
Downstream geneCrb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, Cntnap5c, LOC674419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474A17.T7 (MSMg01no474_a17.b1)MSMg01-474A17.TJ (MSMg01no474_a17.g1)
ACCAG556199AG556200
length727714
length of high quality
(start - end)
508 (75 - 582)507 (73 - 579)
definitionCHROMAT_FILE: MSMg01no474_a17.b1 PHD_FILE: MSMg01no474_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:21 2005CHROMAT_FILE: MSMg01no474_a17.g1 PHD_FILE: MSMg01no474_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGATCCGC
GGAATTCCTTATGTTCCATGAATTATCAGCCTAGTTTACTTGACCAGTAC
CAGGAAAATGAAATAGTTTACAAAAAAAAAAAAAAAGAAAAGAAAGTTGC
AAGGAGTGATGCACATACCTTTAATCCCAGCATGTGAGAGGCAGAAGCAA
GTGGATCTCTGTGAGTTTGCGGCAAGCCTGGTCTACATAGTTTATTCCAG
GATAGCCTGGTCTACATGGTGAAATCCTGCTTCAGGGGAAACACACACAC
ACACACACACACACACATTTTTTTACACACACACACACAGAGAGCTCAGG
AGATGTTCAGTGTCTGTGAGGGCTGTGCATAAGGACCACATGAGCTCATC
AAAAAGGCTGGATGTGATGCTGCAGGCCTCGCATACCAGTGCTGAGGGCA
GAGACACAAGGGTCCCTAGGGCTTGCTGCCAACCAGCTTAGTTCAAGGTT
GAGTGAGAGACCCTGTGCTGAAAGGATATGGACAGTAGAGAGAGAGAGAT
GGGGTAGGACATCTGACTCTTCTCTTCGGGCTTGGCTCGCGTGTGCGCGC
GCACACACACACACACACACAGGTGAGGTCAAGGTAGGCGCCGGTTTATA
ATTAAATCTAACTCACCATCTCTATCTTTTCACTTTCCAACTCTCTCTCC
ACCTCGTCTCACCTTTTTTATCTCTTG
NNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCCGCGGAATTCCTCCTTAGCATGCCTGAGACCCCTG
GGTTCCATTTTCATCCCATAACCAAAAAAATCAACCAACCTGTACAGGAC
TAGTTTTGTAGAAAGATACATGTAGGCTTGTAGTCAGAGTGTAATCAGAA
CACCTGCTTAGATTAAACCTGTGCGGTATTAAAAAAAAAAAAAAAAAAAT
ACGGACAAAGACCTGTGCAGAATCTCGCCCAGCTTAACGGAAGGCCTTAT
GTCCACACTGAATATTTTTCGTATGAGGTCCACCTGCCAGGGAAGTGTCT
GTGAGGAAGCATGGATTTGGGGCGTCTGTGCAGAAGTAGTGATGTCCCAC
GGCACCCACACAGAAACTCTTATGCATGGAAACATCTGGTAGCTGGTAGA
GGGAGTGGGTGGGACTTTCACCTGTTCACCACAGATGTATGGGCACAGCC
TGGGTGGGGACCGCATGACCTCTGGATGTATCTTTGGGTAAAAGGTGGTC
ATGCACCGGATATGATGGCACGTGATTGCCGTCCCAGCAACTGGGATTCC
GAAGCAGGCGAACTGCTGCACATTCAAGGCCAGCGAGGCTACATAGACCT
TGGCTCAAAAAGACAATACCCACAATAGCCTTATAGCTGCAGTTGGAGTT
CTGTGGCTAGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_a17.g1 MSMg01no474_a17.g1 CHROMAT_FILE:
MSMg01no474_a17.g1 PHD_FILE: MSMg01no474_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:21 2005
         (507 letters)



>mm_chr17_57200290_57201196
          Length = 907

 Score =  888 bits (459), Expect = 0.0
 Identities = 497/513 (96%), Gaps = 6/513 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctccttagcatgcctgagacccctgggttccattttcatcccataaccaaaaaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 ttcctccttagcatgcctgagacccctgggttccattttcatcccataaccaaaaaaatc 833

                                                                       
Query: 61  aaccaacctgtacaggactagttttgtagaaagatacatgtaggcttgtagtcagagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 aaccaacctgtacaggactagttttgtagaaagatacatgtaggcttgtagtcagagtgt 773

                                                                       
Query: 121 aatcagaacacctgcttagattaaacctgtgcggtattaaaaaaaaaaaaaaaaaaata- 179
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | 
Sbjct: 772 aatcagaacacctgcttagattaaacccgtgcggtattaaaaaaaaaaaaaaaaaaaaaa 713

                                                                       
Query: 180 -----cggacaaagacctgtgcagaatctcgcccagcttaacggaaggccttatgtccac 234
                |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aaaaccggacaaagatctgtgcagaatctcgcccagcttaacggaaggccttatgtccac 653

                                                                       
Query: 235 actgaatatttttcgtatgaggtccacctgccagggaagtgtctgtgaggaagcatggat 294
           |||||| |   | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 actgaagaacatccgtatgaggtccacctgccagggaagtgtctgtgaggaagcatggat 593

                                                                       
Query: 295 ttggggcgtctgtgcagaagtagtgatgtcccacggcacccacacagaaactcttatgca 354
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttggggcgtctgcgcagaagtagtgatgtcccacggcacccacacagaaactcttatgca 533

                                                                       
Query: 355 tggaaacatctggtagctggtagagggagtgggtgggactttcacctgttcaccacagat 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tggaaacatctggtagctggtagagggagtgggtgggactttcacctgttcaccacagat 473

                                                                       
Query: 415 gtatgggcacagcctgggtggggaccgcatgacctctggatgtatctttgggtaaaaggt 474
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gtatgggcacagcttgggtggggaccgcatgacctctggatgtatctttgggtaaaaggt 413

                                            
Query: 475 ggtcatgcaccggatatgatggcacgtgattgc 507
           |||||||||||||||||||||||||||||||||
Sbjct: 412 ggtcatgcaccggatatgatggcacgtgattgc 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)