Query= MSMg01no474_d21.b1 MSMg01no474_d21.b1 CHROMAT_FILE:
MSMg01no474_d21.b1 PHD_FILE: MSMg01no474_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:37 2005
(493 letters)
>mm_chr17_86013265_86014153
Length = 889
Score = 872 bits (451), Expect = 0.0
Identities = 479/491 (97%), Gaps = 6/491 (1%)
Strand = Plus / Minus
Query: 1 tcctccccgaccccttccctttcccctccctctttccccctaggcgggtccgagttctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcctccccgaccccttccctttcccctccctctttccccctaggcgggtccgagttctct 627
Query: 61 gggctcctcccgccccgccaacggtggctcgggtgttgggggcggggtggcagggtactt 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gggctcct-----cccgccaacggtggctcgggtgttgggggcggggtggcagggtactt 572
Query: 121 gcaccctaccatgggggctttctggcttggggttccaggttagtagatcccttgtgacgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gcaccctaccatgggggctttctggcttggggttccaggttagtagatcccttgtgacgc 512
Query: 181 cttacccggtaccccggagttccaatcaccaatgattactctcagcttctggcactgagc 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctcacccggtaccccggagttccaatcaccaatgattactctcagcttctggcactgagc 452
Query: 241 ctctgc-ttcctagttgggggaaggagacagcgcgcagcagaacctctagatttgaacct 299
|||||| | || || ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 451 ctctgcgtcccaagaggggggaaggagacagcgcgcagcagaacctcaagatttgaacct 392
Query: 300 gcaggaaaggggtcgagggacccctggatcagaggtcttggtgtaggggtcacagaggaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gcaggaaaggggtcgagggacccctggatcagaggtcttggtgtaggggtcacagaggaa 332
Query: 360 aaagagctctccatcctctttgtgggagacgcgagagactgcttggagggatgcgcgcca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaagagctctccatcctctttgtgggagacgcgagagactgcttggagggatgcgcgcca 272
Query: 420 gtggcacaaagccgggcagaggagtggggagtggttctgcaaccgagggtagtggtgagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gtggcacaaagccgggcagaggagtggggagtggttctgcaaccgagggtagtggtgagg 212
Query: 480 tgggggaggag 490
|||||||||||
Sbjct: 211 tgggggaggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 889
Length adjustment: 10
Effective length of query: 483
Effective length of database: 879
Effective search space: 424557
Effective search space used: 424557
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_d21.g1 MSMg01no474_d21.g1 CHROMAT_FILE:
MSMg01no474_d21.g1 PHD_FILE: MSMg01no474_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:37 2005
(488 letters)
>mm_chr17_85830410_85831297
Length = 888
Score = 936 bits (484), Expect = 0.0
Identities = 487/488 (99%)
Strand = Plus / Plus
Query: 1 ttcctcttctgtatttaaagacaaaataaaatatagaagacagctacatcctagggtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctcttctgtatttaaagacaaaataaaatatagaagacagctacatcctagggtttt 260
Query: 61 ttttattatatcttttgaaataatttgtatataccttttaaataattccaagtgccacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttattatatcttttgaaataatttgtatataccttttaaataattccaagtgccacaa 320
Query: 121 gaaaataatgttaatagctcaaaatcaaaagtttaaaaaaataccctaagtataattttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaataatgttaatagctcaaaatcaaaagtttaaaaaaataccctaagtataattttt 380
Query: 181 aaaatcttttttctcctcaagcgttttacgatgggataatgagacagacgtctctcaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatcttttttctcctcaagcgttttacgatgggataatgagacagacgtctctcaact 440
Query: 241 ggaaggactttttgacattgttatgtgtgctgactggtaagtacacaaaaatcacaaaac 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaggacattttgacattgttatgtgtgctgactggtaagtacacaaaaatcacaaaac 500
Query: 301 tcctgttagtgaaaaaaaataaaaagctcctctggggtaatcgggccgcagtgctttgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctgttagtgaaaaaaaataaaaagctcctctggggtaatcgggccgcagtgctttgct 560
Query: 361 gatggccaagccaagtcaacaaatgaagcacaaaagccaccttaacctcaccaaattaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatggccaagccaagtcaacaaatgaagcacaaaagccaccttaacctcaccaaattaat 620
Query: 421 attcatctccatgtgacagctaggaggtagtctcctatcacacagtaacttctaccacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcatctccatgtgacagctaggaggtagtctcctatcacacagtaacttctaccacat 680
Query: 481 tatttccc 488
||||||||
Sbjct: 681 tatttccc 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
