NNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATAACTATTCGGTAAAAGAAACCCAACTGAGAGAAGATTCTA
TTGGTCCATATTCTAGCCTTGCTTACAAAAGAACTGCCTAGAATAGTGCC
AATAGCAGAAAGAAACACATGACCTCAGTCTATTAAATTCTATTCTGCCT
AATATTTTATAACTAGCATCAGTGAATTAATCTATAAATCTCCCTTGGTA
ATTAACAGCTCCTAACAGTGTGGGCTATGGTCTTACACTATCGTGGTTCG
GACTTTTGCAGGGCATAGGTTGACACTGTGACTCACCTTGGAATCTAGAG
CTAGTCTATCCTCTATTATAACCAGTCCTGAGCATAATCTACCATATTCT
AACCTAGGCTATTTTACCTAGAAGGTATATGAGTCTATAACCACCACAAA
GAAGAAACAGGAAAAACTACCCTTTCTAGGTACCCCCTGTTTCATTCTGA
AAAATAAATGCAAATTTCTAANAAGTATTAATTGGGATTGGCCTTTTGTG
CCAAAACTATGACCAGGCAACAATATGCTTGAAGGGCTGGACTTGGGTGA
CATTCTATATGAAACGATAGAAATGACCTGATACTTAAAATTAAATAATC
ATAAAGTTTACATTTTCTGGAAAAAAGCCAAAAAACGCTTTTTTTTAATA
GGAGGATGGAACAACCCTGCTTATGAACAAAAAATGTCTTAAACTC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCCCATTCTCGCGG
TGTAATAGTGGGGTGATGGGCAAGCAACGGATCAGGAGCTGTCACGCCAT
ATCAGGTGCTGAAACTTCACGCTGCAGGTTATAAAAGCAGCGCCATTTTC
CCGGTTCGGGGTCTTCCTGAGAAGCAAGCAATAAAGCTTTTGCCACGGAA
GATTCTGGTTTGTTGCGTCTTTCTTGCCGGTCGAGAGGGATGCACTAGAG
ATGGAAAGATCTTCCATGTTCATGGATGGCAGGATTAATATATTTTAAAT
ATTATATTTTTACTAAAATGGCCATCTTGCCAAAAGCAATCTACAGATTC
AATGCAATCCCCATCAAAACTCCAGTTCAATTCTTCATAGAGTTAGGGGA
TCTGCAACCCTATAGGTGGAATAAGAACTAACCAGTTACCACCACCCCCC
CCCTCCCCAGAGCTCGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCT
GGTTGGCCCATTGGTCGTGCAAACTTTATATGCCTCAGTACAGGGGAATA
CCANGGCATGGGAGTGGGTNGGGTGGNGGAANNNNNNNNNNNNTTNTTTT
TTTTTNTTNTNTNNTTTTNTTTTTTTTGTTNTNTTCTTGTTNTGTTTTGT
TNNTTTTTTTTTTTTTTTTTTTTTTT

Query= MSMg01no474_n19.b1 MSMg01no474_n19.b1 CHROMAT_FILE:
MSMg01no474_n19.b1 PHD_FILE: MSMg01no474_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:27 2005
         (492 letters)



>mm_chr17_60227243_60228134
          Length = 892

 Score =  909 bits (470), Expect = 0.0
 Identities = 484/489 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaataactattcggtaaaagaaacccaactgagagaagattctattggtccata 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ggaattcaataactagtgggtaaaagaaacccaactgagagaagattctattggtccata 633

                                                                       
Query: 64  ttctagccttgcttacaaaagaactgcctagaatagtgccaatagcagaaagaaacacat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttctagccttgcttacaaaagaactgcctagaatagtgccaatagcagaaagaaacacat 573

                                                                       
Query: 124 gacctcagtctattaaattctattctgcctaatattttataactagcatcagtgaattaa 183
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 572 gacctcagtctattaaattctattctgcctaatattttgtaactagtatcagtgaattaa 513

                                                                       
Query: 184 tctataaatctcccttggtaattaacagctcctaacagtgtgggctatggtcttacacta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tctataaatctcccttggtaattaacagctcctaacagtgtgggctatggtcttacacta 453

                                                                       
Query: 244 tcgtggttcggacttttgcagggcataggttgacactgtgactcaccttggaatctagag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tcgtggttcggacttttgcagggcataggttgacactgtgactcaccttggaatctagag 393

                                                                       
Query: 304 ctagtctatcctctattataaccagtcctgagcataatctaccatattctaacctaggct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctagtctatcctctattataaccagtcctgagcataatctaccatattctaacctaggct 333

                                                                       
Query: 364 attttacctagaaggtatatgagtctataaccaccacaaagaagaaacaggaaaaactac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 attttacctagaaggtatatgagtctataaccaccacaaagaagaaacaggaaaaactac 273

                                                                       
Query: 424 cctttctaggtaccccctgtttcattctgaaaaataaatgcaaatttctaanaagtatta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 272 cctttctaggtaccccctgtttcattctgaaaaataaatgcaaatttctaaaaagtatta 213

                    
Query: 484 attgggatt 492
           |||||||||
Sbjct: 212 attgggatt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)