Query= MSMg01no475_n20.b1 MSMg01no475_n20.b1 CHROMAT_FILE:
MSMg01no475_n20.b1 PHD_FILE: MSMg01no475_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:47 2005
(279 letters)
>mm_chr17_68459041_68459719
Length = 679
Score = 447 bits (231), Expect = e-130
Identities = 262/273 (95%), Gaps = 3/273 (1%)
Strand = Plus / Minus
Query: 2 ggaattcttctttgtttc-cccagagtgtcttgaatccatgtccttagttaagccagagt 60
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 601 ggaattcttctttgaatcacccagtgtgtcttgaatccatgtccttagttaagccagagt 542
Query: 61 catttgaggcaactggcagctttaaactaaattattattattattattattattattatt 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 541 catttgaggcaactggcagctttaaactaaattattattatta--attattattgttatt 484
Query: 121 aattactatttccaacagaagagtagtaagttcctttgtaaccagacctgcagcattttg 180
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 483 aattactatttccaacagaagagtagtaagttccttcgtgaccagacctgcagcattttg 424
Query: 181 caatggacaccaagtgaccttcctagaaaagcttagaaaagccatagtcccagagagata 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 caatggacaccaagtgaccttcctagaaaagcttagaaaagccatagtcccagagagatg 364
Query: 241 ccacagagaggtattcatctataccttagaaaa 273
|||||||||| ||||||||||||||||||||||
Sbjct: 363 ccacagagagatattcatctataccttagaaaa 331
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no475_n20.g1 MSMg01no475_n20.g1 CHROMAT_FILE:
MSMg01no475_n20.g1 PHD_FILE: MSMg01no475_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:47 2005
(410 letters)
>mm_chr17_68308128_68308937
Length = 810
Score = 770 bits (398), Expect = 0.0
Identities = 407/410 (99%)
Strand = Plus / Plus
Query: 1 ctggaactgacagggagaaatggaatctacgcatgttgatgctgataaggtagggtactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggaactgacagggagaaatggaatctacgcatgttgatgctgataaggtagggtactc 260
Query: 61 ccacagggaaaactccaggctcagactcctttactgatacactactccccagcaacagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacagggaaaactccaggctcagactcctttactgatacactactccccagcaacagag 320
Query: 121 caacacgcaatacgaatgtgcacagaagacactggcacgggactgctccattgtataaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacacgcaatacgaatgtgcacagaagacactggcacgggactgctccattgtataaaa 380
Query: 181 ccaggtctaactcagaaaccccatacaaagtggttctgagaataaaaacctaaagatggg 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggtctaactcagaaaccccgtacaaagtggttctgagaataaaaacctaaagatggg 440
Query: 241 ccttattcataaacccgcagggaaggcctggcaaccacttatgacactggtcctggtggc 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tcttattcataaacccgcagggaaggcctggcaaccactgatgacactggtcctggtggc 500
Query: 301 taaagcctgtggccagcattagtgctgagtcagaagttttgctttctgtttttcttgaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagcctgtggccagcattagtgctgagtcagaagttttgctttctgtttttcttgaac 560
Query: 361 actgtaacttgtctgctgaagaaacacctggtatgcaaccagcacctaca 410
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgtaacttgtctgctgaagaaacacctggtatgcaaccagcacctaca 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
