BAC Information

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BAC

Clone NameMSMg01-476E12
Chromosome17 (Build37)
Map Location 52,433,047 - 52,433,287
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043451, LOC100043452, Satb1, EG628919
Downstream geneLOC672987, EG328839, Kcnh8, LOC668506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476E12.T7 (MSMg01no476_e12.b1)MSMg01-476E12.TJ (MSMg01no476_e12.g1)
ACCAG557910AG557911
length749755
length of high quality
(start - end)
240 (73 - 312)243 (72 - 314)
definitionCHROMAT_FILE: MSMg01no476_e12.b1 PHD_FILE: MSMg01no476_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:20 2005CHROMAT_FILE: MSMg01no476_e12.g1 PHD_FILE: MSMg01no476_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXATTCATTACCGGATCCGCGGA
ATTCTCCTTTTACGAAACATATAAAGTTTGCATTACCAAGGGGCGTCTCT
TTCCAGTGATGACCATCTTCTGCTACATATGCAGCTGGAGATATGAGCTC
TGGGGGTACTGATTAGTTCATAGTATTGTTCCACCTATAGGGTTGCAGAC
CCCTTCAGCTCGTTGGATGCTTTCTCTAGCTTCTCCATTGGGGGCCCTGT
GTTCCATCCTATAGATGACTGTGAGCATCCACTTGATAATTTATATAGAT
AGCACTTCATTTTTCCCTCGTAAGACAAGAAGGGAGCTAGCATATTGCCC
CTTTTATCTTGGAGGGAGCTGAGGCTGAGAGTAGTGTTTACGTTTGAGTG
ACAGCAGCAGAAAATTGTGAAATAAGGAACTAGTACCAGTCTTTTATTCA
AGAGGTGATCCTAGAAGATGCCAGTATAAAACTTGAGGGGCTAATGAGAT
TAGCTCGGCACATGGTCTTACGTTGGCTTTCATTGCGAGCAGCCTCCGTT
TTATCTTCTAGGGAGACTGTGCTAGTCTCTTTTTATTCGTCTCTTGCCTT
TATCCATAATTTCCTGCTTCAGTCTTCATGTAGAATCGTCTGTATTCTTT
TTTTTTTGTTTTCCCGCTTGTGTTTTGCCCTTTTTTGTCTTCCCCGCTTG
TTCGCGCTTATTTTTTCCGTCCCTTTTCCCTTTCCCTTTCTTCTCTCTG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAATCTTTAGGTGAA
CTATAGAATGACACACAGCAATTCTAACTGGATCTGAGCATCATTCTGGA
ATACAATGGTCTTTTGTGCTAATTTATGCTACCCTTAATTAATTAAAAAT
GTAACAATATTTTAATTGCAGTACATTTCGTAAATGGTTTTCAGAAAGAT
ACTCTCACACAAACATATGAGAAACTTGGTGCATATCCATCCTCTATATC
CTAATATATTCTAATTTATAATGTTTGGCTTACTTCCAATTGCCACAAGG
TGGCAAAGTAGGTAANGGTTATTAGGCTAAAGTAAACAAAGGCCCAAAAC
ATAAAGAATACAACCTTGGCCCTTTTACTTTAAGAAACTTCATGCCCATG
GAGTTCTTTAAAGAAAATCAATAGCATCTATAGTTGAAGCCTGTCATTCT
TAACTAAGTATTATAGTCATGAACCATGGCCTAACATGTCAGCAGACAGG
CTGTGGCATGTGGGCTTGCTGACTCACAGGTCAAGTAAGAAAAGGATTCC
CCTAAGCCTGCTAAGAACTCACTCAGCCCCTGTAGTCCTTTACGGTCTAT
AAGTTTCTCTGAGCTGCCATTATACTCCGTTGCACCCCACGCCTGATATT
TTCTTTGTTTACCCGCACTTACTAAAACCACTTTTTTGTTCTACCCCTAG
TATTCCCACCCCCCTTGTTTTTATTTCCATTTTCCCCCTTTTACACGTCT
TCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_e12.g1 MSMg01no476_e12.g1 CHROMAT_FILE:
MSMg01no476_e12.g1 PHD_FILE: MSMg01no476_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:21 2005
         (243 letters)



>mm_chr17_52432847_52433487
          Length = 641

 Score =  435 bits (225), Expect = e-126
 Identities = 238/243 (97%), Gaps = 2/243 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctaactggatctgagcatcattctggaatacaatggtcttttgtgctaatttatgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctaactggatctgagcatcattctggaatacaatggtcttttgtgctaatttatgcta 260

                                                                       
Query: 61  cccttaattaattaaaaatgtaacaatattttaattgcagtacatttcgtaaatggtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 261 cccttaattaattaaaaatgtaacaatattttaattgcagtacatttcgtacacggtttt 320

                                                                       
Query: 121 cagaaagatactctcacacaaacatatgagaaacttggtgcatatccatcctctatatcc 180
           |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 cagaaagatactc--acacaaacatatgaggaacttggtgcatatccatcctctatatcc 378

                                                                       
Query: 181 taatatattctaatttataatgtttggcttacttccaattgccacaaggtggcaaagtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taatatattctaatttataatgtttggcttacttccaattgccacaaggtggcaaagtag 438

              
Query: 241 gta 243
           |||
Sbjct: 439 gta 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 641
Length adjustment: 9
Effective length of query: 234
Effective length of database: 632
Effective search space:   147888
Effective search space used:   147888
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)