BAC Information

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BAC

Clone NameMSMg01-476K16
Chromosome5 (Build37)17 (Build37)
Map Location 143,282,801 - 143,283,04931,433,191 - 31,433,427
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSdk1, LOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954
Downstream geneLOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476K16.T7 (MSMg01no476_k16.b1)MSMg01-476K16.TJ (MSMg01no476_k16.g1)
ACCAG558203AG558204
length743743
length of high quality
(start - end)
249 (67 - 315)240 (76 - 315)
definitionCHROMAT_FILE: MSMg01no476_k16.b1 PHD_FILE: MSMg01no476_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:50 2005CHROMAT_FILE: MSMg01no476_k16.g1 PHD_FILE: MSMg01no476_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:50 2005
singlet/doubletsingletsinglet
BLAST hitpluralunique
Map location.(143,282,801 - 143,283,049)(31,433,191 - 31,433,427)
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGGATTACCCACTTCTTGCCACTGAGAAACTGCTAGAAGATAGC
ACAAGGCATACCTGCTATTCAGATCCCAGAGGACACTGGGGCTGTCACTT
CATGTGTGGCTCGGCCAAATGTGGGACATAGGGGCACGATGCAGACCCTC
TGATCTTGGTCCCAAGACTGCGGCCTGAGGAAGCTGTGTAGATGATTCTC
AACCTGAGGCTTATGGGATCCCACCAAACCCAGTTCACCTCTCACCAACA
GCAGGAGCTGTGGTAGGTTTTCTGAGAATGTTCCTCCTTAGGAGTATTTG
AACTTGGTAGTGTTGGCCTTTGGGGAGGCTTAGGATGTGGGTGCAGCCTT
GGTGGATGAAGTATGTCTCCAGTTTGCTCTCCCTGTTTTTTCCTTGCATG
ATGGGAGCTCCTGACACCATGCCTGCAGCTTGAGCCTGTGTCTCCCTGCT
CTGGTGGACTCATCCCTCTGGAAGTGTAAGCCCGGTAAAATTTTCCTTCT
ATAAATTGCCCTATTCATACCGCAATTTTTAATAAAGTCACTGTTAACTT
GACGTCATTTATAGTCATTACGGAAACAAATCTCCTGATTAGCTCATGAC
CAATTTCCCCGATGTGTGTTACGAATTACTGTGGTGCCCCCGAATATGCC
CGAACCAATTATCTGCTATTGCCCTTATTCGTAGGCGTGGCCN
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCGTCACCAGCACCGGATCGCCCC
CGCACTGTCTCTCAAGGCCACTCTAGGAGCCCTTACTTCAAAGACGTCCC
ACTCTAGGAAAAGCGCTTGGTTTGTCCCCGGCTCTCCAGCCACACAGCAG
AGGGAGACAAACGGCGGAGAGGCCGAAGCGGGGCCCACGGCAGGTGCGTG
GCGGCTGGCAGGTGAGCGCCGCTGGGGAGGGTCCTCCGTTGTCCCCGCGC
CTACCTGCGCTCCGTATTCTTGTGTCGCGTGCTTCCTGCCGTCGACTTCC
TGGAGCGGTCGCCCTTTCACTTTCCCGGCCCTGTGAACGCCGACCCAGAG
CGGCTCCTCCCTCTCCCGCGCGCCCCCTGACCCCGGCCCCGCGTGCGCCC
AAGGGATGCTCAGATCGCACACAGCCCGGAGATGCTCAGCTGGAGCATCC
TCTAGCTGTTCCTGGGTCCCCACACCTGCCTGTTATGCTCTCCTAGGCCC
CGTATGACGTCGGCCCCTTATTGGTATGGCGCCTAGCACCCTAACTTTAG
CTTCTATGGTACCTTTTCACCACCCAGGCTTTTGCTTCTGAGGCGTATCC
TTTTTATTGCCCCTCCCCTATATCAGTTCTCCAGCTATAGTACTTGCCCC
CCTCGGATTTTTTGCACTGCACCACGTCTTTCCTTTCGCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_k16.b1 MSMg01no476_k16.b1 CHROMAT_FILE:
MSMg01no476_k16.b1 PHD_FILE: MSMg01no476_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:50 2005
         (249 letters)



>mm_chr5_143282601_143283249
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcttgccactgagaaactgctagaagatagcacaaggcatacctgctattcagatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttcttgccactgagaaactgctagaagatagcacaaggcatacctgctattcagatcc 260

                                                                       
Query: 61  cagaggacactggggctgtcacttcatgtgtggctcggccaaatgtgggacataggggca 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 cagaggacactggggctgtcacttcatgtgtggcttggccaaatgtgggacataggggca 320

                                                                       
Query: 121 cgatgcagaccctctgatcttggtcccaagactgcggcctgaggaagctgtgtagatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgatgcagaccctctgatcttggtcccaagactgcggcctgaggaagctgtgtagatgat 380

                                                                       
Query: 181 tctcaacctgaggcttatgggatcccaccaaacccagttcacctctcaccaacagcagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcaacctgaggcttatgggatcccaccaaacccagttcacctctcaccaacagcagga 440

                    
Query: 241 gctgtggta 249
           |||||||||
Sbjct: 441 gctgtggta 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no476_k16.g1 MSMg01no476_k16.g1 CHROMAT_FILE:
MSMg01no476_k16.g1 PHD_FILE: MSMg01no476_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:50 2005
         (240 letters)



>mm_chr17_31432989_31433628
          Length = 640

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Minus

                                                                       
Query: 3   cgtcaccagcaccggatcgcccccgcactgtctctcaaggccactctaggagcccttact 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgtcaccagcaccggatcgcccccgcactgtctctcaaggccactctaggagcccttact 380

                                                                       
Query: 63  tcaaagacgtcccactctaggaaaagcgcttggtttgtccccggctctccagccacacag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcaaagacgtcccactctaggaaaagcgcttggtttgtccccggctctccagccacacag 320

                                                                       
Query: 123 cagagggagacaaacggcggagaggccgaagcggggcccacggcaggtgcgtggcggctg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagagggagacaaacggcggagaggccgaagcggggcccacggcaggtgcgtggcggctg 260

                                                                    
Query: 183 gcaggtgagcgccgctggggagggtcctccgttgtccccgcgcctacctgcgctccg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcaggtgagcgccgctggggagggtcctccgttgtccccgcgcctacctgcgctccg 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)