BAC Information

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BAC

Clone NameMSMg01-476P07
Chromosome17 (Build37)
Map Location 79,695,423 - 79,695,662
singlet/doubletsinglet
Overlap geneLOC383277
Upstream geneCrim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812
Downstream geneCdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476P07.T7 (MSMg01no476_p07.b1)MSMg01-476P07.TJ (MSMg01no476_p07.g1)
ACCAG558423AG558424
length756743
length of high quality
(start - end)
247 (77 - 323)242 (80 - 321)
definitionCHROMAT_FILE: MSMg01no476_p07.b1 PHD_FILE: MSMg01no476_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:14 2005CHROMAT_FILE: MSMg01no476_p07.g1 PHD_FILE: MSMg01no476_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAATAGGATCC
GCGGAATTCCATCCTTTCAATGATGGAGGCAGAGCGTGTTCTTCTAGGAG
GCAAATGGAAGGATTTTACCCAGGACAGAGCATCAGTTATGCTGGATGCT
GTCAGTAAGTCAGGGATGATAAAGACTGAGAGCTGATCTTTGGATTTATT
GATGTGTAGGTCGTAGGTGTGCTTGACACTTATGTTTCAGTAGATGGAGG
AGATTATTCCTGAAGGATAGGCATAAGAACAGACCTCCTAGAAAGCCTGG
GGGAAGTTAAGATAGACGTTTCCGTANGTACCTAAAAGCGACAAAATTGG
TAGACTAGGTGTTGTTATTATATCTATTATTATAGTTTACATAACTGTTA
TAACTATGTTCAATGTATATCTAAGAGAGAAGGCCTTTTTATTGGACAAC
AAGGGTGAGATGTTGTGGATCTGATTTAATGCTTACCTTACGGCTTCTCA
TCTTACACTTGGATTCCAATGTCCACTGTTTTATGTCTGCCCCTGCTAGA
TCGAGTCTTTTTTTTTCATATTCCTCCCCCTTTGTTTCCTGCCTGCTTAT
TTATATGACCCCTGCTCGCTCCGCCTTATTTTTCCCTTTTTTTCCTTCCG
CCCATATTCTTTTTTTTTTTTCCTTCCATTGCTTTTTCCATTATCCCCTT
CCTTCCCTATTCCCCTCTCTCTCCCTTTCTTTTCCTCTCTTCCCCTTTTC
CTTATC
TTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGGGGCAGGCATGGCCCA
TCAGGGAGAGGCCCAAGGACATTTTTGTGGTATCTCAATTGCTTCCTGCA
GAGTCCCTGTAACTATTGACATCTGAGTCTCTTGTTCTGTGTCCCTGCCT
GGGTGGGATGGTTGTCTGTGATGGGGAAGGCGGAAATGTAAAACACCCCA
ACTACTCCACCTCCCCCAAAAAGAACCCAGTGGATGCCTGGACTCTGAGC
TGCATTCCTGAGTTCCTCTTATATCTTTTAAACAAGTTTTCAAGAGCCAG
ATATTCACAAGGTTCAGGCTCCGGGTTGTGAAATATTTGGACTTCTCCAT
TGGCACGGGGCAGCTCATTGTGAGAAAACAGCTCCTCGAACAGTGTTAGA
GCCTGCTCTAGCCAGCAGCCCACCAACTCCTTCCTTCTCCAGCTTCTAAA
ATGGCTCCAACTAAATATGAAACTCTAACTAATGTAACATTCTGAAACCA
TTTGCTAATGTCCGTGTATTGACGGATAACGCTTTTATATACTCACCATT
TTTTTCTTTGCCTTATCCCCCCACCTGTTTCTTCCCCCCCCCTTTTTTTT
CACCCCCTCTCTTTTTTCTTTACACCATTTGTTCTTTATCTATTTATCCC
TTTTAATTTTTCCCCCCCCCACCCTTCTCTTTTTCTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_p07.g1 MSMg01no476_p07.g1 CHROMAT_FILE:
MSMg01no476_p07.g1 PHD_FILE: MSMg01no476_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:14 2005
         (242 letters)



>mm_chr17_79695223_79695864
          Length = 642

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaggggcaggcatggcccatcagggagaggcccaaggacatttttgtggtatctcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctcaggggcaggcatggcccatcagggagaggcccaaggacatttttgtggtatctcaat 381

                                                                       
Query: 61  tgcttcctgcagagtccctgtaactattgacatctgagtctcttgttctgtgtccctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgcttcctgcagagtccctgtaactattgacatctgagtctcttgttctgtgtccctgcc 321

                                                                       
Query: 121 tgggtgggatggttgtctgtgatggggaaggcggaaatgtaaaacaccccaactactcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgggtgggatggttgtctgtgatggggaaggcggaaatgtaaaacaccccaactactcca 261

                                                                       
Query: 181 cctcccccaaaaagaacccagtggatgcctggactctgagctgcattcctgagttcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cctcccccaaaaagaacccagtggatgcctggactctgagctgcattcctgagttcctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)