BAC Information

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BAC

Clone NameMSMg01-477C06
Chromosome17 (Build37)
Map Location 52,030,784 - 52,031,120
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d5, LOC100043451, LOC100043452, Satb1, EG628919
Downstream geneLOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477C06.T7 (MSMg01no477_c06.b1)MSMg01-477C06.TJ (MSMg01no477_c06.g1)
ACCAG558562AG558563
length722740
length of high quality
(start - end)
613 (69 - 681)335 (335 - 669)
definitionCHROMAT_FILE: MSMg01no477_c06.b1 PHD_FILE: MSMg01no477_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:29 2005CHROMAT_FILE: MSMg01no477_c06.g1 PHD_FILE: MSMg01no477_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATTTCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGCCCTTTCCTAAACATGATAAAAGCAATCTACAGCAAACC
AATAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAA
AATCAGGGACTAGACAAGGCTGTCCACTCTCACCCTACCTATTCAACATT
GTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGGG
GATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATA
TGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAGC
CTGATAAACAGCTTCAATAAAGTAGCTGGATATAAAATAAACTCAAACAA
GTCAATGGCCTTTCTCTACACAAAGAATTAACAGGCTGAGAAAGAAATTA
GGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGC
GTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTC
TCTAAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCAT
GCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCCATCTTGCCAAAA
GCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTT
CAACGAATTAGAAAGGGCAATN
NTTTTTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTACACACGAAATTCCAGGCCAGTCAAGACTA
CATAGTGAGATCCTGTCTCCAAAAAAAAAAAAAAAAAAAAATCTAATTAC
GTATAGTATCTATTACAGCCCAAGTGTTAATCGCAGGCATGAAAAGCACT
ACATTAAGGAGATCAGACATAATGTACATTTGTTTCTTAGCCACAGATCA
AATGTGTGAATGTCTACACCCATGCTTAACCTGGAGAACAGTGTGGTTTG
CACCTTGTGAGTGGTGTAAACTTACTTTATGATGAGTATTCTCTCATAGT
CTCTTGTAGTCTCCCTCTCTCTCTTCCTCCCTTCCTCCCTTTCTCTTTCT
TTCTCTCTCTTTCCCTCTGCACCCCTCTCTCTATAGCATTGGAACCAAAA
CTTAGCAAAGAGTGATCATTCTGTGGTTTTGGACCCACCGATGGGCCCAC
TAGTCCTATTGCTTTCTTTGAGATAAATGTACAAATTCTCCTAAGCAAGA
ATTAAAGGGAAAATACAAGGGTTTAATTTTTTTTGAAAATAAAATATTCC
CTTCTGTTGGTTAATTTATTTAAAATCCATCCCCATCACTTAATTAGCAT
CATTTATTCTGGTATAATTCCACACTTGTTGCTTTGTTCAAAACTTTAAG
TTCTGAGCACTGTGTGTTTCGCATTTTCTCCCTCTGCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_c06.g1 MSMg01no477_c06.g1 CHROMAT_FILE:
MSMg01no477_c06.g1 PHD_FILE: MSMg01no477_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:30 2005
         (335 letters)



>mm_chr17_52030500_52031236
          Length = 737

 Score =  601 bits (311), Expect = e-176
 Identities = 330/337 (97%), Gaps = 2/337 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtattctctcatagtctcttgtagtctccctctctctcttcctcccttcctccctttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtattctctcatagtctcttgtagtctccctctctctcttcctcccttcctccctttct 562

                                                                       
Query: 61  ctttctttctctctctttccctctgcacccctctctctatagcattggaaccaaaactta 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 ctttctttctctctctttccctctgcacccccctctctatagcattggaaccaaaactta 502

                                                                       
Query: 121 gcaaagagtgatcattctgtggttttggacccaccgatgggcccactagtcctattgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaagagtgatcattctgtggttttggacccaccgatgggcccactagtcctattgctt 442

                                                                       
Query: 181 tctttgagataaatgtacaaattctcctaagcaagaattaaagggaaaatacaagggttt 240
           ||||||||||||||||||||||||||| || |||||||||||||||||| | ||||||||
Sbjct: 441 tctttgagataaatgtacaaattctccaaaccaagaattaaagggaaaaaataagggttt 382

                                                                       
Query: 241 aatttttttt--gaaaataaaatattcccttctgttggttaatttatttaaaatccatcc 298
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattttttttttgaaaataaaatattcccttctgttggttaatttatttaaaatccatcc 322

                                                
Query: 299 ccatcacttaattagcatcatttattctggtataatt 335
           |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatcacttaattagcatcatttattctggtataatt 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 737
Length adjustment: 9
Effective length of query: 326
Effective length of database: 728
Effective search space:   237328
Effective search space used:   237328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)