BAC Information

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BAC

Clone NameMSMg01-477G18
Chromosome17 (Build37)
Map Location 33,468,210 - 33,468,618
singlet/doubletsinglet
Overlap genenone
Upstream geneAkap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468
Downstream geneZfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477G18.T7 (MSMg01no477_g18.b1)MSMg01-477G18.TJ (MSMg01no477_g18.g1)
ACCAG558777AG558778
length762781
length of high quality
(start - end)
---409 (256 - 664)
definitionCHROMAT_FILE: MSMg01no477_g18.b1 PHD_FILE: MSMg01no477_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:51 2005CHROMAT_FILE: MSMg01no477_g18.g1 PHD_FILE: MSMg01no477_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGATATTTTTACGCAAATGGATGCATCTGGAGGATATCATCTTGAGTG
AAGTAACCTAATCGCTGAAGAATACACATGATATGCGCTCACTGATAAAA
GGATATTGGCCCAAAAATGTAAAATATCCGAGATACTTTTTGCATAACAC
ATGAGACTCACTAAGAATGAAGACACACAGTGTGTATACTTTGTTCCTTC
TTACAATGCGGAACAAAATACCCATGGAATGATTTACATCAGACAAAGTT
CATGTGATGATACAGAACAAAGGATCATCCAGAGACTGCCCCACCCATTG
ATCCATCCCTTATACCACCACCAAACCCACACACTATTGCATATTCCAAC
AAGATTTTGCTGAAAGGACCCTGAAATAGCTCTCTATTGTGAAGCAATGT
TACTGCCTGGCACATACAGAATGGGATGCTCACAATCATCTATTGTATGG
AACACAGGGCCCCCAATGAAAGAGCTATACAAAGTACCTCCTGAGCTAGA
CGCGTCTGCAACCCTAGACGAGGAACAACTCTATGAACTAACCAGGCCTC
CCCAGAGCTGCGTCTCTAGTTGCATATGTAGCAGATGATGGCCTACTCGG
CCATCAATGGGAGGATAAGCCCTTGCTCTGATGAAGATCATATGCTTATA
TTTTTTGATAACACGAGGGAATATACTTGCACGCAGATGGTGATGACATG
TGAGTAGGTGGG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGGCAAAGAGCTCCAAATACTCAGTA
AATATATAAAAGTTATTTATTTCCTCTTCATACCAACTGTCAAAAATTAC
AATTACTTTCTATTGTGGTAGTTGACATTTACAGACATGTTTTATGTAAT
TCTGTTGCCCAGTTTATTATACATAAAATAGGCTTCCAAATGCCTAGAAA
ATGGAGACCAACAGAAATGAAAAGAGGAGACAAGGTACTCAGCTACCTTT
TTAAAATGTTTGTGATATTTTATAGAACAATAAAAAAGAATTCATTTGAT
GAAACAAATGAAATACAAATTTCCTATTTACAAAGTTTAATTTCATTAAG
AACCTTTATTTTGATCCTTGATTTTTCTTATTTTGGGAGTGGTGGGATCA
AAGCCAAGGTGAAAAAGTTTGGTAAATGTTTGAAAGCTTTAGTTGTTGTT
GTTGTCCTTTTGAGACAGGGCGTAGCCCTGGCATCTTGGAATTCTGTAGA
CCAAGGTTAGAGATCTGCCTGCCTCTGCCTCCTGAGTACTGGGATTAAAG
GCATCTGCTACCACCACCTGGCCTACTTATATTTATTTATTTTTTGTTCT
TTTGTTTTTTTGAGACGGTTTCTCTGTAACAGTTTGACTGTTCCGACACC
TTGTAAACCAAGCTGGCTTTGAACTCAAGAGATCCTCCTGCTTCTGCATC
TTCAGTGCTGCGATTCAAAGCATGTGCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_g18.g1 MSMg01no477_g18.g1 CHROMAT_FILE:
MSMg01no477_g18.g1 PHD_FILE: MSMg01no477_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:51 2005
         (409 letters)



>mm_chr17_33468010_33468818
          Length = 809

 Score =  752 bits (389), Expect = 0.0
 Identities = 404/409 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaccaacagaaatgaaaagaggagacaaggtactcagctacctttttaaaatgtttgtga 60
           ||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct: 201 gaccaacagaaatgaaaagaggagacaaggtgctcggctaccttttaaaaatgtttgtga 260

                                                                       
Query: 61  tattttatagaacaataaaaaagaattcatttgatgaaacaaatgaaatacaaatttcct 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattttaaagaacaataaaaaagaattcatttgatgaaacaaatgaaatacaaatttcct 320

                                                                       
Query: 121 atttacaaagtttaatttcattaagaacctttattttgatccttgatttttcttattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttacaaagtttaatttcattaagaacctttattttgatccttgatttttcttattttg 380

                                                                       
Query: 181 ggagtggtgggatcaaagccaaggtgaaaaagtttggtaaatgtttgaaagctttagttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagtggtgggatcaaagccaaggtgaaaaagtttggtaaatgtttgaaagctttagttg 440

                                                                       
Query: 241 ttgttgttgtccttttgagacagggcgtagccctggcatcttggaattctgtagaccaag 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ttgttgttgtccttttgagacagggcgtagccctggcgtcttggaattctgtagaccaag 500

                                                                       
Query: 301 gttagagatctgcctgcctctgcctcctgagtactgggattaaaggcatctgctaccacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttagagatctgcctgcctctgcctcctgagtactgggattaaaggcatctgctaccacc 560

                                                            
Query: 361 acctggcctacttatatttatttattttttgttcttttgtttttttgag 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acctggcctacttatatttatttattttttgttcttttgtttttttgag 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)