MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-477L07
Chromosome	17 (Build37)
Map Location	71,191,864 - 71,192,213
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100043630, LOC623112, LOC623143, Dlgap1
Downstream gene	Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100043630 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043630
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC623112 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623112
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 ESTs, 12 Proteins pseudo : _no_value

name	LOC623143 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623143
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Dlgap1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224997 MGI:1346065
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Tgif1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21815 MGI:1194497
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668724 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668724
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 89 ESTs, 7 Proteins pseudo : _no_value

name	LOC546695 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546695
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 39 ESTs, 8 Proteins

name	LOC240156 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:240156
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 12 Proteins pseudo : _no_value

name	Mylc2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67938 MGI:107494
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2900073G15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67268 MGI:1914518
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myom1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17929 MGI:1341430
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lpin2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64898 MGI:1891341
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Emilin2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:246707 MGI:2389136
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043644 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043644
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST pseudo : _no_value

name	Smchd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74355 MGI:1921605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043879 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043879
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 1 Protein

name	Ndc80 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67052 MGI:1914302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668740 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668740
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Spdya (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70891 MGI:1918141
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 4 Proteins

name	LOC623451 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623451
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 ESTs

name	Wdr43 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72515 MGI:1919765
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 220 ESTs, 3 Proteins

name	4632412N22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320159 MGI:2443498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC027072 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225004 MGI:2385061
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Clip4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78785 MGI:1919100
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dlgap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362084 GeneID:224997 MGI:1346065
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : discs, large (Drosophila) homolog-associated protein 1 transcript_id : NM_177639.4

name	Dlgap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51339020 GeneID:224997 MGI:1346065
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : discs, large (Drosophila) homolog-associated protein 1 transcript_id : NM_027712.2

name	Tgif1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982824 GeneID:21815 MGI:1194497
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TG interacting factor 1 transcript_id : NM_009372.2

name	LOC546695 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268902 GeneID:546695
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 39 ESTs, 8 Proteins product : similar to ribosomal protein L12 transcript_id : XM_621465.4

name	Mylc2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803472 GeneID:67938 MGI:107494
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin light chain, regulatory B transcript_id : NM_023402.2

name	2900073G15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71037402 GeneID:67268 MGI:1914518
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2900073G15 gene transcript_id : NM_026064.2

name	Myom1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754787 GeneID:17929 MGI:1341430
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myomesin 1 transcript_id : NM_010867.1

name	Lpin2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373198 GeneID:64898 MGI:1891341
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lipin 2 transcript_id : NM_022882.3

name	Emilin2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328358 GeneID:246707 MGI:2389136
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : elastin microfibril interfacer 2 transcript_id : NM_145158.2

name	Smchd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254164 GeneID:74355 MGI:1921605
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SMC hinge domain containing 1 transcript_id : NM_028887.2

name	LOC100043879 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268903 GeneID:100043879
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 1 Protein product : similar to ATP synthase beta-subunit transcript_id : XM_001481180.1

name	Ndc80 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:12963624 GeneID:67052 MGI:1914302
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NDC80 homolog, kinetochore complex component (S. cerevisiae) transcript_id : NM_023294.1

name	Spdya (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268905 GeneID:70891 MGI:1918141
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 4 Proteins product : speedy homolog A (Drosophila) transcript_id : XM_001481181.1

name	LOC623451 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268799 GeneID:623451
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 ESTs product : hypothetical LOC623451 transcript_id : XM_001480625.1

name	Wdr43 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268801 GeneID:72515 MGI:1919765
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 220 ESTs, 3 Proteins product : WD repeat domain 43, transcript variant 5 transcript_id : XM_001005092.2

name	4632412N22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383397 GeneID:320159 MGI:2443498
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4632412N22 gene transcript_id : NM_177087.3

name	BC027072 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55742822 GeneID:225004 MGI:2385061
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC027072 transcript_id : NM_146082.3

name	Clip4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27754154 GeneID:78785 MGI:1919100
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CAP-GLY domain containing linker protein family, member 4 transcript_id : NM_030179.2

name	Dlgap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51339023 CCDS:CCDS28953.1 GeneID:224997 MGI:1346065
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0016301 - kinase activity [Evidence IEA] GO_process : GO:0007267 - cell-cell signaling [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence TAS] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; SAP90/PSD-95 associated protein 1; DAP-1 beta; guanylate kinase associated protein product : discs large homolog-associated protein 1 isoform 1 protein_id : NP_808307.2

name	Dlgap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51339021 GeneID:224997 MGI:1346065
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0016301 - kinase activity [Evidence IEA] GO_process : GO:0007267 - cell-cell signaling [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence TAS] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2; SAP90/PSD-95 associated protein 1; DAP-1 beta; guanylate kinase associated protein product : discs large homolog-associated protein 1 isoform 2 protein_id : NP_081988.2

name	Tgif1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982825 GeneID:21815 MGI:1194497
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0008432 - JUN kinase binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : TALE family homeobox; TG interacting factor product : TG-interacting factor protein_id : NP_033398.2

name	LOC546695 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:82995066 GeneID:546695
definition	codon_start : 1 product : similar to ribosomal protein L12 protein_id : XP_621465.2

name	Mylc2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21728376 CCDS:CCDS28954.1 GeneID:67938 MGI:107494
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 product : myosin regulatory light chain-like protein_id : NP_075891.1

name	2900073G15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71037403 CCDS:CCDS28955.1 GeneID:67268 MGI:1914518
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 product : myosin light chain, regulatory B-like protein_id : NP_080340.2

name	Myom1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754788 GeneID:17929 MGI:1341430
definition	GO_component : GO:0005856 - cytoskeleton [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0030017 - sarcomere [Evidence IDA]; GO:0005863 - striated muscle thick filament [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0005200 - structural constituent of cytoskeleton [Evidence TAS] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0006936 - muscle contraction [Evidence IPI]; GO:0006941 - striated muscle contraction [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : skelemin product : myomesin 1 protein_id : NP_034997.1

name	Lpin2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543129 CCDS:CCDS28956.1 GeneID:64898 MGI:1891341
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : lipin 2 protein_id : NP_075020.2

name	Emilin2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21553119 GeneID:246707 MGI:2389136
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 note : basilin; elastin microfibril interface located protein 2 product : elastin microfibril interfacer 2 protein_id : NP_660140.1

name	Smchd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254165 CCDS:CCDS28958.1 GeneID:74355 MGI:1921605
definition	GO_component : GO:0005694 - chromosome [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0051276 - chromosome organization and biogenesis [Evidence IEA] codon_start : 1 product : SMC hinge domain containing 1 protein_id : NP_083163.2

name	LOC100043879 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268904 GeneID:100043879
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481230.1

name	Ndc80 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963625 CCDS:CCDS28959.1 GeneID:67052 MGI:1914302
definition	GO_component : GO:0000775 - chromosome, pericentric region [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0000089 - mitotic metaphase [Evidence ISS] codon_start : 1 exception : mismatches in translation note : highly expressed in cancer, rich in leucine heptad repeats; kinetochore associated 2 product : HEC protein protein_id : NP_075783.1

name	Spdya (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268906 GeneID:70891 MGI:1918141
definition	codon_start : 1 product : spermatogenesis related protein Gs4 protein_id : XP_001481231.1

name	LOC623451 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268800 GeneID:623451
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480675.1

name	Wdr43 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268802 GeneID:72515 MGI:1919765
definition	codon_start : 1 product : WD repeat domain 43 isoform 5 protein_id : XP_001005092.2

name	4632412N22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893007 CCDS:CCDS28961.1 GeneID:320159 MGI:2443498
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC320159 protein_id : NP_796061.1

name	BC027072 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254190 CCDS:CCDS28962.1 GeneID:225004 MGI:2385061
definition	codon_start : 1 product : hypothetical protein LOC225004 protein_id : NP_666194.2

name	Clip4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754155 GeneID:78785 MGI:1919100
definition	codon_start : 1 product : restin-like 2 protein_id : NP_084455.2

name	LOC100043630 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043630
definition	number : 2 pseudo : _no_value

name	LOC100043630 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043630
definition	number : 1 pseudo : _no_value

name	LOC623143 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623143
definition	number : 1 pseudo : _no_value

name	LOC668740 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668740
definition	number : 1 pseudo : _no_value

name	LOC668740 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668740
definition	number : 2 pseudo : _no_value

name	LOC668740 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668740
definition	number : 3 pseudo : _no_value

name	LOC668740 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668740
definition	number : 4 pseudo : _no_value

name	LOC668740 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668740
definition	number : 5 pseudo : _no_value

name	LOC668740 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668740
definition	number : 6 pseudo : _no_value

name	LOC668740 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668740
definition	number : 7 pseudo : _no_value

name	LOC668740 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668740
definition	number : 8 pseudo : _no_value

name	LOC668740 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668740
definition	number : 9 pseudo : _no_value

name	LOC668740 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668740
definition	number : 10 pseudo : _no_value

name	LOC623112 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268795 GeneID:623112
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 ESTs, 12 Proteins product : similar to Stathmin 1/oncoprotein 18 pseudo : _no_value transcript_id : XR_034760.1

name	LOC668724 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268901 GeneID:668724
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 89 ESTs, 7 Proteins product : similar to ribosomal protein S24 pseudo : _no_value transcript_id : XR_035031.1

name	LOC240156 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268796 GeneID:240156
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 12 Proteins product : similar to ribosomal protein L7a pseudo : _no_value transcript_id : XR_034762.1

name	LOC100043644 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268798 GeneID:100043644
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : similar to Usp16 protein pseudo : _no_value transcript_id : XR_034775.1

clone name	MSMg01-133K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-205G24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-053B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448P18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-415C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308I14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-308O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118H13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-273M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210J23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-467M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-216J11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-076H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003N02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-477L07.T7 (MSMg01no477_l07.b1)	MSMg01-477L07.TJ (MSMg01no477_l07.g1)
ACC	AG558994	AG558995
length	1,304	741
length of high quality (start - end)	---	365 (77 - 441)
definition	CHROMAT_FILE: MSMg01no477_l07.b1 PHD_FILE: MSMg01no477_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:13 2005	CHROMAT_FILE: MSMg01no477_l07.g1 PHD_FILE: MSMg01no477_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:13 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	ACTCTGCTCAGTTACACACTGCTCATGCTGATTTAAATGCGCACGCGCAG CCCGCGCTGCTCCTCTCCTCTCACGGCTGAGCCGCGCCGCGCGCCNGCTG GTTGTGTGTCTCCCTTACTCTTCATTGTTACTCGTGGACTATTTCCGTAC TACGCAGTGCATCTCGTCCGCACTGCATAGCTCACNACTAGCGCCGTAAC TATATGGATCACTCNAGCGTAATCTATACGACCCGATGCTGCCGTGACAC TGCGCGATAAGATCGCGCGGTGTGATCGTCTATATGATCGCGATAGCTAA CAGGTCTGCCGATTAGCTATATTATTCTCGCACGTGTGCATGAGATGACA ATAATATATATATGCTCTGAAACTGTAAAGCGAACTGATCTGCGCGCGCG CGCGCGTATGGTCCTGCCTCGTCGCACGGACGCGCGGGCGCGTGTCGTGG CTCGCATAGCAATAATAATATCGGGCGCCGCGTGTAGACGTAGCGCACGG ACGCGGTCTCGTTATATGCGCTGGGGGTCGGCGGCGTTAGAGCGGTATGT CGCTAGGTGGCCGTGTGGCGCGGCGCTGACTGAGTCTATATATAGCACTA AATGAGTGGAGACGCGGGTCGCGTTGTGGTTGCGTGGCGGCGTCGCTTGC CGCCGCTTTGTGAGCGAACTAACGTAGTCCGACATACACAAACCATACCC ACCTACCAGCGCTGACTGAGTACTCTACTTGTGAGGATCGGCGTTCTGCG TGACGCGTGGCGGGTGTAGTGTGTGCTCACCCTCCGGCTTATTCTGATCT CTTATAGTGCGGTACCATACGTCGGCTATGCTCTCCGTCGCGTATATAGA GTAGTGCGACCGCGTCCAAACTGTACCACATCTCGGTCGCACTGGCCTCT TCTGGCCTTGCAGCCACACCAGAACTGACCACGCCGACTGATGTTACTTA TACGACCCGGACTCGTCCATATATTCGCGACAGATAAGATATCGTAATAC CCAGCGCCCACATATTTTGTTCGCATAGCGCTCTTCGTAGTGTATTCCAC CGACCCGCCGTGATATGTATGTTGGATTATTCACGTTGTGATCACCCGCT CGTATCAGAACATCGGCCGGAAATTTCGTGGAGTCACATGCCATGCTTGG TCGATCTGGCTCCGCTACTTATATGCCTGAGTCTTTTACACGTGGCCGCG GNACTATAGATGCGGTCGGATCGAGAGGAGAGGCGCCGCGGTGACGATAC GCCGAGTGTGACCGCACGCGAGCGCGTGTCGATGTATGGACTGACATACA CGCG	TTTTTTACGATGAAGTGGGAGGCCTGGNGGCCGCCTGGTCAAAGACAGGA GGTGAACTATAGAAGTACCCGAGAAATTCTTTTGTGTCTACTGTTTTTAT GGTATAACTTTTTGTTTGTTTACTTTTAAACTCCCTGTGTTTAAATACCT TCTTTTCGGGCATATTTAACTGGGTTTTTCATTTAGTCTCTGCTTTTGAG TCACTTTGTTTAGTCACTTTACACCTTATACAGTTTCAGCACCAAGCCCA GCTATCTCTTGATGAATTTGTAGTCCATGTACGGATGGTTTTCCCCTGCC TTTGTATTCCTCCGTTTTTTTCTTCTTTTTAGTTTAATTAGTATTTTCTA GTATTTTTTCTTCAGTTTTTATTTTCAGTCATGGTTAGTTTAATTGTTGT GGNTTTTTTTTTTTTTTTTTTTTTTTTGGCCCACTAAATAAACCATGCTG GCCTTGAACTCACAGAGTTCTCTTCCTCCCAAGCTCTGGAGTCAAAGGCA TTTTCTACTCCACCCAGCCACCCAGCCATACTGGTAATTCTGAGTGGTTG TAGGGACAATAACGCGTGCCTTTAGTTATTCAAGTCTCCGGTGAAAAAAG TCTCTTCACTTTCCCCCTTTGCTTTTGTGAACCTGGTCAAATAAACATGT TTCTATTCTTTAAACTCTATCATACACAAAAAAGTTTTTGCTTATAAACA AATAAATTTCATCTTGGCTGGTCTGGCTTTGGAAAAATTTG
quality values	Open. Hide. 6 6 8 8 9 9 9 9 8 6 6 7 8 10 10 8 6 6 8 6 6 8 8 9 9 10 15 12 9 8 10 10 10 8 8 7 9 9 6 6 6 6 8 8 10 6 6 6 6 8 10 8 8 8 8 8 8 8 8 8 7 6 6 6 6 6 6 6 6 9 9 9 9 9 8 8 6 6 6 6 9 12 12 21 21 10 7 6 6 6 6 9 9 9 3 0 3 6 6 6 8 8 8 8 9 10 8 8 8 10 8 7 7 6 6 6 6 6 8 8 8 8 10 10 8 8 8 8 8 8 8 8 10 10 11 11 11 13 9 9 9 10 9 10 8 6 6 6 6 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 9 7 8 6 6 6 6 8 8 6 6 6 6 8 8 3 0 3 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 10 10 10 9 9 9 9 9 9 3 0 3 9 8 8 6 6 6 6 6 9 9 9 8 8 8 8 8 8 8 10 9 9 9 8 8 8 8 8 8 8 10 8 8 8 8 8 10 8 7 6 7 6 8 8 10 9 8 8 8 8 7 7 7 8 8 10 10 8 7 7 7 8 8 10 9 9 9 9 8 10 8 6 6 8 8 10 10 10 8 8 6 8 6 7 7 7 7 6 10 8 8 8 8 8 9 8 8 8 8 10 10 11 16 16 9 8 8 8 9 10 9 6 8 6 8 8 8 6 6 6 8 6 6 6 6 10 8 10 9 9 9 9 8 8 8 6 6 6 8 8 8 8 8 9 11 8 8 8 8 8 8 6 8 6 6 8 8 8 8 8 8 8 6 6 6 6 8 6 8 8 8 8 8 10 8 8 8 8 8 8 10 10 8 8 8 7 6 8 6 9 12 8 6 6 6 6 6 6 8 6 6 6 6 10 11 11 6 6 6 6 8 8 13 10 10 8 8 8 8 8 10 12 12 10 8 8 8 8 8 9 9 9 8 8 8 8 8 8 8 8 8 10 6 6 6 10 10 10 10 9 9 10 10 8 8 9 9 10 10 11 9 8 8 6 6 6 6 8 8 8 8 9 10 10 8 8 8 6 6 8 6 10 10 6 6 6 6 8 8 10 9 9 9 7 8 8 8 6 6 6 6 8 8 8 8 10 9 8 8 8 8 8 8 10 8 9 9 9 10 13 8 8 8 8 8 8 8 8 8 8 8 6 6 6 8 6 6 6 6 6 6 6 8 8 8 11 13 10 8 8 10 10 10 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 8 8 8 9 10 9 9 10 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 6 6 6 6 8 7 6 8 8 9 8 7 7 6 8 8 8 8 8 10 10 10 10 15 10 12 10 8 8 8 8 8 8 10 8 9 9 8 8 8 8 8 8 8 6 6 8 6 6 6 6 6 8 10 10 8 8 8 8 8 8 8 7 7 7 6 6 6 8 8 8 6 6 6 8 10 10 9 10 11 10 10 12 12 13 12 10 9 8 6 6 6 8 6 6 6 6 10 8 8 8 6 6 8 8 8 8 16 13 11 11 8 8 6 6 8 6 10 10 8 8 8 8 13 8 8 8 8 9 9 9 8 10 8 6 6 6 8 6 6 7 6 10 10 10 10 10 10 8 8 7 6 8 6 8 8 13 8 9 10 8 8 8 8 10 10 8 6 6 6 6 8 8 10 10 10 11 8 8 8 8 8 8 8 10 10 8 8 8 8 6 6 6 6 8 6 8 8 8 8 8 8 8 8 7 7 8 9 9 10 10 10 10 10 10 9 9 9 9 9 11 12 10 9 8 6 8 6 7 8 10 14 10 10 9 9 9 9 9 8 8 8 6 6 6 6 6 8 8 11 8 8 8 8 8 8 8 6 6 8 8 6 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 13 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 8 8 8 8 10 9 12 18 13 12 10 13 12 11 10 8 8 8 8 9 11 9 9 10 10 10 10 8 10 6 10 6 6 8 8 8 8 8 8 8 9 10 9 9 8 8 8 6 6 8 8 8 8 10 8 8 8 8 8 8 9 9 8 8 8 8 8 6 6 6 6 6 8 8 12 9 9 9 9 9 8 8 8 10 8 8 6 6 7 7 7 7 10 10 8 8 8 8 6 6 6 6 6 8 8 8 9 10 9 9 9 9 10 10 9 9 8 11 8 8 8 8 6 6 8 8 6 6 6 7 8 6 6 6 6 6 6 8 8 8 8 8 8 7 7 7 10 10 10 10 8 8 8 8 6 6 6 6 6 6 6 6 6 8 8 10 8 9 9 6 8 6 6 8 6 6 6 8 7 8 8 6 6 6 8 10 8 8 8 8 8 8 8 8 8 8 8 10 9 9 10 10 10 8 8 8 8 8 8 8 8 12 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 8 8 10 10 8 9 9 9 10 10 6 7 6 8 8 6 6 6 6 6 6 17 6 7 6 6 8 8 8 8 8 8 10 15 17 20 20 15 11 8 6 6 6 6 8 8 8 8 8 8 7 3 0 3 7 7 8 9 9 9 11 8 6 6 6 6 6 8 10 8 6 6 6 6 8 8 7 7 6 6 6 7 8 8 8 10 10 10 9 8 8 8 8 6 6 6 6 8 7 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 7 10 6 6 10 8 16 15 10 8 8 6 8 6 6 8 8 10 10 10 6 6 8 6 6 6 6 8 10 10 10 10 9 8 8 8 8 8	Open. Hide. 10 13 10 10 8 6 6 6 6 6 10 12 9 9 9 12 14 9 9 9 10 10 25 28 25 25 3 0 3 25 19 39 41 23 23 9 9 9 9 9 7 7 7 7 8 8 8 8 8 9 10 23 21 13 13 12 27 27 47 30 27 12 9 9 9 9 9 9 10 10 11 11 12 10 12 13 18 22 25 34 39 36 59 59 59 59 59 59 59 59 59 59 48 59 59 57 57 57 57 57 57 59 57 57 68 57 68 68 68 68 68 68 68 68 68 68 68 68 48 48 48 48 54 54 54 54 57 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 54 57 54 57 54 54 54 57 57 57 57 57 57 57 57 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 44 44 46 54 54 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 68 68 68 68 59 57 57 57 57 48 57 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 33 23 8 8 8 8 8 9 17 21 27 59 59 59 50 50 50 53 53 53 57 57 57 57 57 59 59 59 59 57 57 57 48 48 59 59 59 68 68 68 68 68 57 57 46 43 43 46 47 59 59 59 57 57 57 57 57 57 48 48 57 57 59 59 59 59 59 59 57 48 48 48 48 44 48 48 47 46 47 47 41 23 23 3 0 3 20 20 37 37 59 59 59 59 59 41 28 23 23 23 32 32 32 39 39 59 59 59 37 30 30 17 21 15 28 23 28 28 39 28 28 18 18 13 18 18 28 26 17 17 13 26 19 33 25 28 19 21 21 18 18 21 41 28 32 18 18 11 12 12 13 18 18 28 36 36 37 43 43 37 44 30 28 25 25 25 30 37 36 32 32 20 20 20 28 30 32 15 15 14 21 21 33 26 34 20 17 17 24 24 26 29 25 28 24 27 21 13 13 24 16 16 23 30 19 15 12 21 15 26 26 30 24 24 19 19 23 34 28 28 28 34 21 18 11 11 10 13 10 9 9 9 9 9 9 13 17 15 11 10 9 9 11 13 11 11 12 18 12 14 14 22 24 21 19 13 13 18 18 21 24 22 18 16 14 16 16 18 15 19 14 13 14 15 15 23 22 19 34 20 22 23 24 20 20 20 18 18 11 11 11 12 23 26 33 36 28 26 28 23 21 10 10 10 22 23 25 17 17 14 16 12 11 11 13 23 17 24 28 28 16 11 10 10 10 15 10 13 13 17 10 12 12 10 12 8 8 8 10 10 9 13 15 23 19 12 10 8 8 8 8 8 8 9 8 8 8 8 8 8 11 17 25 15 8 8 8 10 14 25 16 11 9 6 6 6 6 6 8 8 8 8 10 8 8 8 9 8 8 8 10 12 10 11 11 18 17 14 11 15 8 6 6 6 10 13 13 14 14 14 17 15 16 10 10 12 15 16 9 10 10 10 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no477_l07.g1 MSMg01no477_l07.g1 CHROMAT_FILE:
MSMg01no477_l07.g1 PHD_FILE: MSMg01no477_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:13 2005
         (365 letters)



>mm_chr17_71191690_71192453
          Length = 764

 Score =  627 bits (324), Expect = 0.0
 Identities = 345/352 (98%), Gaps = 3/352 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttttgtgtctactgtttttatggtataactttttgtttgtttacttttaaactccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttcttttgtgtctactgtttttatggtataactttttgtttgtttacttttaaactccct 465

                                                                       
Query: 61  gtgtttaaataccttcttttcgggcatatttaactgggtttttcatttagtctctgcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtgtttaaataccttcttttcgggcatatttaactgggtttttcatttagtctctgcttt 405

                                                                       
Query: 121 tgagtcactttgtttagtcactttacaccttatacagtttcagcaccaagcccagctatc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cgagtcactttgtttagtcactttacaccttatacagtttcagcaccaagcccagctatc 345

                                                                       
Query: 181 tcttgatgaatttgtagtccatgtacggatggttttcccctgcctttgtattcctccgtt 240
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 344 tcttgatgaatttgtagtccatgtacgtatggttttcccctgcctttgtattcctccg-t 286

                                                                       
Query: 241 tttttcttctttttagtttaattagtattttctagtattttttcttcagtttttattttc 300
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tttttcctcattttagtttaattagtattttctagtattttttcttcagtttttattttc 226

                                                               
Query: 301 agtcatggttagtttaattgttgtg-gntttttttttttttttttttttttt 351
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 225 agtcatggttagtttaattgttgtgtg-tttttttttttttttttttttttt 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 764
Length adjustment: 9
Effective length of query: 356
Effective length of database: 755
Effective search space:   268780
Effective search space used:   268780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information