BAC Information

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BAC

Clone NameMSMg01-477N10
Chromosome17 (Build37)
Map Location 85,559,764 - 85,560,264
singlet/doubletsinglet
Overlap gene1700106N22Rik
Upstream geneZfp36l2, Thada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901
Downstream geneEG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477N10.T7 (MSMg01no477_n10.b1)MSMg01-477N10.TJ (MSMg01no477_n10.g1)
ACCAG559095AG559096
length725652
length of high quality
(start - end)		623 (67 - 689)---
definitionCHROMAT_FILE: MSMg01no477_n10.b1 PHD_FILE: MSMg01no477_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:23 2005CHROMAT_FILE: MSMg01no477_n10.g1 PHD_FILE: MSMg01no477_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TCTCTTTGTCCTGGATGGGATGACAACTGCAGCGCACCCCCCGCCCCGCG
GCTAGAGAAAAAACACCTCTCAGCACAGATTGGATCATTAGCTCCTCCTG
CAAACCCACACTAAACACTTATGAACATAAAATGGTTCCTAAAATCCACT
TGTAAAATAACCTTTCATTGTATGAATTATGAAATGAAGGATTTCAAAAC
TTGAATCTTACAGGTGTCTAGAACAGAACACCACTATAAGTATCAAAAGT
TTATGTTGATTTATTTGTTAAAGATCTAGGACATGATACTTTATGCCTTC
TTTAAATGAGTATCACTGGGCTGGAGGGATGGCTCAGCGGTTAAGAGCAC
TGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTG
GCTCACAACCATTCATAATGAGATCCAAAGCCCTCTTCTGGTGTGTCAGA
AGAGAGCAACAATGTACTCACATATATAAAATAAATCTATTTTTTAAAAT
CATTATTTTTTTCTGGATATAAGGTCATTATTATGGGTATAAGTTATTTT
CATTGTTTACTATATAATGACATAGCCCCAAGATTTACTGGTACTGCCCT
GAAAGGTTGGCAACTAAAAAAAAACCCACCTCCCCACCNNNNNNNNNNNN
NTNNNNNCTTTTTTTTTTTTTCTTT

NAAACCAACCCCCCNNNNNNNGGGCTTTTAAACACTATGAAGTGGTAGGN
TGGGGGCGCCGTTCACACAGGGGGNGACCNANAGATTTCAAAAAAAAGGG
CCNGGGAGAGCCAACTCCCAGAAGNGGNNCNTNGACAACTACACCTGACG
NANGNGTCCACAGACAGACAGAAACCACACACACACACACAAACAGAATT
TTAAAACATTGAGAAAGGGATGGGTAAGGTTTTGTGGAGTTTTCTGATGG
GAAAGGAGGGGGGNTCCCTTGCCCTTTTCTAGCCGGTGAAAAGAAACAAA
AAGCTCAAGGATGGGGGGCAACCCCCCCGGGGGAAAAAAAAAAAAAGGGG
GGGAATTTTTTTTTTTTTTTTTAAACCCCCCGGGGGAGAGAACACCCGGC
GGCCAAAACACAAAAAAAAAAAAAGAGNGNNACCGCCCAAAAAAAATATA
TCTTATCTCCCCCCGGGGGGGGGCGGGTTTGCGGTTTTATATTATAACTT
TAATAAAAATAACATACATACCTTCGTTCGCCCCCCCTACCCCCCTGTGT
TTTCTTCCCACCCCCCCCCTAAAGTAAGACGCGCCTCACCCGTACCTAAC
CTTCTTACCTCATATTCCTTATGCTTTTCCTCTCGTCTCTCTCCACCCCC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_n10.b1 MSMg01no477_n10.b1 CHROMAT_FILE:
MSMg01no477_n10.b1 PHD_FILE: MSMg01no477_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:23 2005
         (623 letters)



>mm_chr17_85559764_85560786
          Length = 1023

 Score =  878 bits (454), Expect = 0.0
 Identities = 490/502 (97%), Gaps = 2/502 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggatgacaactgcagcgcaccccccgccccgcggctagagaaaaaacacctctcagcac 60
           |||| |||||||||||||||||| |||||||||||||||||| |||||| ||||||||||
Sbjct: 501 gggaggacaactgcagcgcaccctccgccccgcggctagagagaaaacatctctcagcac 442

                                                                       
Query: 61  agattggatcattagctcctcctgcaaacccacactaaacacttatgaacataaaatggt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 agattggatcattagctcctcctgcaaaaccacactaaacacttatgaacataaaatggt 382

                                                                       
Query: 121 tcctaaaatccacttgtaaaataacctttcattgtatgaattatgaaatgaaggatttca 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcataaaatccacttgtaaaataacctttcattgtatgaattatgaaatgaaggatttca 322

                                                                       
Query: 181 aaacttgaatcttacaggtgtctagaacagaacaccactataagtatcaaaagtttatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacttgaatcttacaggtgtctagaacagaacaccactataagtatcaaaagtttatgt 262

                                                                       
Query: 241 tgatttatttgttaaagatctaggacatgatactttatgccttctttaaatgagtatcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatttatttgttaaagatctaggacatgatactttatgccttctttaaatgagtatcac 202

                                                                       
Query: 301 tgggctggagggatggctcagcggttaagagcactgactgctcttccagaggtcctgagt 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggctggagagatggctcagcggttaagagcactgactgctcttccagaggtcctgagt 142

                                                                       
Query: 361 tcaaatcccagcaaccacatggtggctcacaaccat-tcataatgagatccaaagccctc 419
           |||| ||||||||||||||||||||||||||||||| |  ||||||||||||||||||||
Sbjct: 141 tcaattcccagcaaccacatggtggctcacaaccatgt-gtaatgagatccaaagccctc 83

                                                                       
Query: 420 ttctggtgtgtcagaagagagcaacaatgtactcacatatataaaataaatctatttttt 479
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 82  ttctggtgtgtcagaagagagctacaatgtactcacatatataaaataaatctatttttt 23

                                 
Query: 480 aaaatcattatttttttctgga 501
           ||||||||||||||||||||||
Sbjct: 22  aaaatcattatttttttctgga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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