Query= MSMg01no477_n15.b1 MSMg01no477_n15.b1 CHROMAT_FILE:
MSMg01no477_n15.b1 PHD_FILE: MSMg01no477_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:24 2005
(682 letters)
>mm_chr17_12939229_12940310
Length = 1082
Score = 1222 bits (632), Expect = 0.0
Identities = 674/694 (97%), Gaps = 14/694 (2%)
Strand = Plus / Plus
Query: 1 attcctggaaa-tatctctccccataaactgatctactaataaaaatactaataaaaaaa 59
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 attcctggaaagaatctctccccataaactgatctactaataaaaatactaataaaaaaa 250
Query: 60 cttgtatgactatggacagtatgcaaggatgcctatcccacagcctaattataatttctt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cttgtatgactatggacagtatgcaaggatgcctatcccacagcctaattataatttctt 310
Query: 120 ttgggggctatctttagcctcagcaccaacacacacacacacacacacacacacac---- 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttgggggctatctttagcctcagcaccaacacacacacacacacacacacacacacacac 370
Query: 176 -----cacaaaaa--aaaaaataaataaaaaaaaaattccttgcccagctctgcagcagc 228
|||| | | | |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 371 acacacacacacaccacaaaa-aaa-aaaaaaaaaattccttgcccagctctgcagcagc 428
Query: 229 cctaacctttgggagtcaatcaggtgacaactgaggcaggcctgctgctgcaccctgcct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cctaacctttgggagtcaatcaggtgacaactgaggcaggcctgctgctgcaccctgcct 488
Query: 289 ctgcgctcaccatgctgtgtcttgattgccttgatttactgttccacatgggaacatgct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctgcgctcaccatgctgtgtcttgattgccttgatttactgttccacatgggaacatgct 548
Query: 349 gcccaaggttagcattggcactgtcactcacatttggctccataataaactgtctcttaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gcccaaggttagcattggcactgtcactcacatttggctccataataaactgtctcttaa 608
Query: 409 tccctctgaggtaagaggtatttttttctatcaaaactgtgaaatcacaaatgtgattta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tccctctgaggtaagaggtatttttttctatcaaaactgtgaaatcacaaatgtgattta 668
Query: 469 aatgtgaaccatttactaatgtactactgaagtctaaagtcacggcacaattactataaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aatgtgaaccatttactaatgtactactgaagtctaaagtcacggcacaattactataaa 728
Query: 529 catgggtttgtctatttttctctgcctgtttttgatatgccttttaatataattactgaa 588
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 729 catgggtttgtctatttttctctgcctatttttgatatgccttttaatataattactgaa 788
Query: 589 aaactagtccatttttagcaaacttaatttttagatatttataaatggccactattgata 648
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 789 aaactagtccatttttagcaaacttaatttttagatattgataaatggccactattgata 848
Query: 649 ttttaaatgctcctatttttaatgacaaaaagat 682
||||||||||||||||||||||||||||||||||
Sbjct: 849 ttttaaatgctcctatttttaatgacaaaaagat 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_n15.g1 MSMg01no477_n15.g1 CHROMAT_FILE:
MSMg01no477_n15.g1 PHD_FILE: MSMg01no477_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:25 2005
(401 letters)
>mm_chr17_13080649_13081453
Length = 805
Score = 746 bits (386), Expect = 0.0
Identities = 398/404 (98%), Gaps = 4/404 (0%)
Strand = Plus / Minus
Query: 1 cttgtcacagaatggagtgatgcgaatgacccacgctgggggaggctccactcctgctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cttgtcacagaatggagtgatgcgaatgacccacgctgggggaggctccactcctgctgg 545
Query: 61 ccctgccccagtggagcagcacaggcggtgtgtgaaatccatagttacacgacggagcag 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 544 ccctgccccagtggagcagcacaggccgtgtgtgaaatccatagttacacgacggagcag 485
Query: 121 gcgctgcactaacgcattgctgctcgaagaccagacacagcacctacctatctcaccaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gcgctgcactaacgcattgctgctcgaagaccagacacagcacctacctatctcaccaga 425
Query: 181 atgcttttaaagcctcagtttttgagatgaagggaggagcgttatcattttctctccaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atgcttttaaagcctcagtttttgagatgaagggaggagcgttatcattttctctccaga 365
Query: 241 gctgagaagacaggtgacccaagcttttaagttgtggggtggagcaaactcagtctcctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gctgagaagacaggtgacccaagcttttaagttgtggggtggagcaaactcagtctcctc 305
Query: 301 accctggaccctcagggactggttctgagccttgatttccacatttcactgtcccttgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 accctggaccctcagggactggttctgagccttgatttccacatttcactgtcccttgat 245
Query: 361 agaggccaccttcctcgggtgatag----gccgctcttacagca 400
|||||||||||||||| |||||||| |||||||||||||||
Sbjct: 244 agaggccaccttcctcaggtgatagataggccgctcttacagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 805
Length adjustment: 9
Effective length of query: 392
Effective length of database: 796
Effective search space: 312032
Effective search space used: 312032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
