Query= MSMg01no477_p22.b1 MSMg01no477_p22.b1 CHROMAT_FILE:
MSMg01no477_p22.b1 PHD_FILE: MSMg01no477_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:36 2005
(583 letters)
>mm_chr17_29541881_29542863
Length = 983
Score = 567 bits (293), Expect = e-165
Identities = 305/309 (98%)
Strand = Plus / Minus
Query: 275 taaaggagtgcgccaccaccgcccggcttgtatttttaaattgtatttatttatatgcac 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 taaaggagtgcgccaccaccgcccggcttgtatttttaaattgtatttatttatatgcac 924
Query: 335 ttctggtgattaagtcttactaggtaactttggctagcacgtagaccaggtcgacttcaa 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 ttctggtgattaagtcttactaggtaactttggctagcacgtagaccaggtcgacttcaa 864
Query: 395 actcacagagagatcctactgtagctgctccccccatcccccagagtgccaagattaaag 454
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 actcacagagagatccgactgtagctgctccccccatcccccagagtgccaagattaaag 804
Query: 455 gtgtatgcagccacacctggtgcgtttccctctctttcaaatgtaaataagcgcgcaacc 514
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 803 gtgtatgcagccacacctggtgcggttccctctctttcaaatgtaaataagcgcacaacc 744
Query: 515 cggagctgttgtgaaatgtcagcatgactgtcgggatagctgctgcagaattattctagc 574
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 743 cggagctgttgtgaaatgtcagcatgactgtcgggatagctgctgcggaattattctagc 684
Query: 575 atcttccag 583
|||||||||
Sbjct: 683 atcttccag 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_p22.g1 MSMg01no477_p22.g1 CHROMAT_FILE:
MSMg01no477_p22.g1 PHD_FILE: MSMg01no477_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:36 2005
(375 letters)
>mm_chr17_29352723_29353497
Length = 775
Score = 623 bits (322), Expect = 0.0
Identities = 362/378 (95%), Gaps = 6/378 (1%)
Strand = Plus / Plus
Query: 1 ccaacagaagaggtcatggtgctctggggctcagtgtctcccataccatattttattctg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ccaacagaagaggtcatggtgctctggggctcagtgtctcctataccatattttattctg 260
Query: 61 tttgggcatcaaggtgtggaggatagggggagttgtggggaagtgattggaacaccgact 120
||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 261 tttgggcatcaaggtgtggaggataggggaagttggggggaggtgattggaacaccgact 320
Query: 121 gagtgagaggacccaggctcaacagctttcctgctgctggagcaggacagagaaggtgcc 180
|||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 321 gagtgagaagacccaggctcaacagctgtcctgccgctggagcaggacagagaaggtgcc 380
Query: 181 ctctctagccgggatgcaagactctatgtagctcataatgaaagacttcctgccaaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctctagccgggatgcaagactctatgtagctcataatgaaagacttcctgccaaaaac 440
Query: 241 cctc---tttncttttttagccattgttccacataatctgttaaatggtcccagccctgg 297
|||| | | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcagct---cctaattagccattgttccacataatctgttaaatggtcccagccctgg 497
Query: 298 gggaatagccatttgccaatgaacttggctgccaagccaccagcaaaccaatcttctcac 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gggaatagccatttgccaatgaacttggctgccaagccaccagcaaaccaatcttctcac 557
Query: 358 cctgctctacccaccctg 375
||||||||||||||||||
Sbjct: 558 cctgctctacccaccctg 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
