BAC Information

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BAC

Clone NameMSMg01-478A11
Chromosome17 (Build37)
Map Location 43,040,148 - 43,208,052
singlet/doubletdoublet
Overlap geneTnfrsf21
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap
Downstream geneLOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478A11.T7 (MSMg01no478_a11.b1)MSMg01-478A11.TJ (MSMg01no478_a11.g1)
ACCAG559241AG559242
length716722
length of high quality
(start - end)		276 (359 - 634)588 (66 - 653)
definitionCHROMAT_FILE: MSMg01no478_a11.b1 PHD_FILE: MSMg01no478_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:38 2005CHROMAT_FILE: MSMg01no478_a11.g1 PHD_FILE: MSMg01no478_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,207,777 - 43,208,052)(43,040,148 - 43,040,691)
sequence
ATGGGGGGGGGGAAAGAGNCCAATTCGGAGCTGATGTGNGGAANCAAGGT
TATCTTCATCCGGCGGCAAAGGGAAAGGGGGGNACANAAAAAGAACAGAA
AAAATATACCCACACACAAAGCCCAGCGGCGNNCACAAAGAGNNAAAAGN
CAAAGGAGGGAAAAGGAGAAAAAAGNAAGNNAAAAAGAAAACCNAGAAAN
NCAGCNAGCCAGCNNCACNNCNCNGGAGAGCCAGGATTTTTTAGAAACCA
CTATCTTCACACACACCTTTGTTTTCTTGCAAAGGAGAACATTCCAGCCA
GCTTTTTTTTTTTCAGGAAGGAGNAAANANNNACAGNNAGCGGGATTTTC
TAGCCCTTGGGCACTGAACCCAGGCAACTCTCTGCCTTGACAGACCATCC
ACTTCCAGAGGTCTGGAAACCTGGTGGGCCTCCCCATCCAAAACTATGTG
ACCCCAGCCTTCAGGATTTAAAAGGTCCATTATGTGTGTGTGAGTTGGAG
TTGGTTAGGAATAAGCCAGGGAGTCATTACGTCCAAAAGAGAAATAAACA
TAAATGAATTGCTTTCTGGTGGCTATGCCACATCCATCCCCGAAGCAACC
AACCACAGGCATCATGTTCAGTTGCGAGGAAACTGAGGCTTATTTATACG
GTCGCTTACCCAGGGTCCTCAAGCTGAGTATACCCCTGAGGAACTGGCAG
CTTGTCAATCTCCACT

ATGTGGGAGGCCTGGGGGCCGCCTGGTCGACAAAGGGGGGTGAACTATAG
AATGCACAAGAAAGTCTCTTGATTACATATTCCAGAATTTTATGTCTTCC
TGCCTCCACCTCCAGAATGTGGGCATGGCAGGCATATGTCACCATGTGCA
TCTAATTTTCTAAGCCATACCATTATTCCTAGAACGATTAATTAAATTAG
TAAATTTAAATTTATTTAATTTTTAGAACTTATAAAATTATAATTATAAA
TAATATAAATAATTTACAAATATTTGTAAATGCTACATATAATAAGTAAG
ATTTTATGATTTTATTAATATGCTTAAATTTAATTAGTAAAAATTTAAAA
TTTTTCATGTATGAATAAATTAAAAGTAAAACCTTTATGGACATTTATTG
ACTTAGAAAGGATAGAATGTTCTTCCTAAACTCTTTGTCAAAAGTCAGCC
TTACTCTGAATAGAGTTTATTGCGTTTTCTGACCAATGGAGCTTGCCTAC
ATTCCATGGCTTCTGTCTCCTTTTTGTATCCTTAGAACCATCAACTTTGC
CTCTCTTGTCAAGCATCAATCTACCTCTGACTAATATCTGACCTCCTTCC
TCCACTTCTTTTTTTTTTTTTTTTTTTTTTTAGATTTATTTATTTATTAT
ATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGA
TCTTGTTACAGATGGTTGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_a11.b1 MSMg01no478_a11.b1 CHROMAT_FILE:
MSMg01no478_a11.b1 PHD_FILE: MSMg01no478_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:38 2005
         (276 letters)



>mm_chr17_43207577_43208252
          Length = 676

 Score =  511 bits (264), Expect = e-149
 Identities = 273/276 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggcactgaacccaggcaactctctgccttgacagaccatccacttccagaggtctggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 476 gggcactgaacccaggcaactctctgccttgacagaccatccacttccagaggcctggaa 417

                                                                       
Query: 61  acctggtgggcctccccatccaaaactatgtgaccccagccttcaggatttaaaaggtcc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 acctggtaggcctccccatccaaaactatgtgaccccagccttcaggatttaaaaggtcc 357

                                                                       
Query: 121 attatgtgtgtgtgagttggagttggttaggaataagccagggagtcattacgtccaaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 356 attatgtgtgtgtgagttggagttggttaggaataagccagggagtcattacatccaaaa 297

                                                                       
Query: 181 gagaaataaacataaatgaattgctttctggtggctatgccacatccatccccgaagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gagaaataaacataaatgaattgctttctggtggctatgccacatccatccccgaagcaa 237

                                               
Query: 241 ccaaccacaggcatcatgttcagttgcgaggaaact 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ccaaccacaggcatcatgttcagttgcgaggaaact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no478_a11.g1 MSMg01no478_a11.g1 CHROMAT_FILE:
MSMg01no478_a11.g1 PHD_FILE: MSMg01no478_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:38 2005
         (588 letters)



>mm_chr17_43039948_43040935
          Length = 988

 Score = 1006 bits (520), Expect = 0.0
 Identities = 538/544 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttgattacatattccagaattttatgtcttcctgcctccacctccagaatgtgggca 60
           ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 201 ctcttgattacatattccagaatcttatgtcttcctgcctccgcctccagaatgtgggca 260

                                                                       
Query: 61  tggcaggcatatgtcaccatgtgcatctaattttctaagccataccattattcctagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcaggcatatgtcaccatgtgcatctaattttctaagccataccattattcctagaac 320

                                                                       
Query: 121 gattaattaaattagtaaatttaaatttatttaatttttagaacttataaaattataatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattaattaaattagtaaatttaaatttatttaatttttagaacttataaaattataatt 380

                                                                       
Query: 181 ataaataatataaataatttacaaatatttgtaaatgctacatataataagtaagatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaataatataaataatttacaaatatttgtaaatgctacatataataagtaagatttt 440

                                                                       
Query: 241 atgattttattaatatgcttaaatttaattagtaaaaatttaaaatttttcatgtatgaa 300
           |||| ||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 441 atgaatttattaatatgcttaaatttaattagtagaaatttaaaaattttcatatatgaa 500

                                                                       
Query: 301 taaattaaaagtaaaacctttatggacatttattgacttagaaaggatagaatgttcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaattaaaagtaaaacctttatggacatttattgacttagaaaggatagaatgttcttc 560

                                                                       
Query: 361 ctaaactctttgtcaaaagtcagccttactctgaatagagtttattgcgttttctgacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaaactctttgtcaaaagtcagccttactctgaatagagtttattgcgttttctgacca 620

                                                                       
Query: 421 atggagcttgcctacattccatggcttctgtctcctttttgtatccttagaaccatcaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggagcttgcctacattccatggcttctgtctcctttttgtatccttagaaccatcaac 680

                                                                       
Query: 481 tttgcctctcttgtcaagcatcaatctacctctgactaatatctgacctccttcctccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgcctctcttgtcaagcatcaatctacctctgactaatatctgacctccttcctccac 740

               
Query: 541 ttct 544
           ||||
Sbjct: 741 ttct 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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