Query= MSMg01no478_d04.b1 MSMg01no478_d04.b1 CHROMAT_FILE:
MSMg01no478_d04.b1 PHD_FILE: MSMg01no478_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:52 2005
(656 letters)
>mm_chr17_40736713_40737768
Length = 1056
Score = 1180 bits (610), Expect = 0.0
Identities = 642/654 (98%), Gaps = 4/654 (0%)
Strand = Plus / Minus
Query: 5 gaattcttcttttccc--gtgtcacatttcacaagctttatatctgagctcaactttaat 62
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gaattcttc--ttcccctgtgtcacatttcacaagctttatatctgagctcaactttaat 799
Query: 63 gctttactcactgacaggtatctctatcaccttaatgtgcatctttgacagcggtcacat 122
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gctttactcactggcaggtatctctatcaccttaatgtgcatctttgacagcggtcacat 739
Query: 123 atttgtagcacatgtccctcttcgaacgtccaattcccacatatcactagtgggtactat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atttgtagcacatgtccctcttcgaacgtccaattcccacatatcactagtgggtactat 679
Query: 183 tgctgccggaggtagagagttcatccttagtcccaatcgccatttccctgttaagttttc 242
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 678 tgctgccggaggtagagagttcatctttagtcccaatcgccatttccctgttaagttttc 619
Query: 243 caagaacccaatgaaaatgctttaacccagcataccattagtatttctgtatttgtactt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caagaacccaatgaaaatgctttaacccagcataccattagtatttctgtatttgtactt 559
Query: 303 agtatatcatttttaaaaaatgtcaggtatatatgagataattgtccatgtaacactcac 362
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agtatatcattttttaaaaatgtcaggtatatatgagataattgtccatgtaacactcac 499
Query: 363 ccttccttcagtgagcatggatggcagcagcagagttacaagaaataacatctctggtaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccttccttcagtgagcatggatggcagcagcagagttacaagaaataacatctctggtaa 439
Query: 423 agaggtcacaactgaaactaaacaaagaaaaaccctttgttgaattaagcagttcagggg 482
|| ||| || |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 438 agcggttacgactgaaactaaacagagaaaaaccctttgttgaattaagcagtacagggg 379
Query: 483 acacagagggaagcaacacattgttagaagataggccagaggaactctgggtaacaaaat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acacagagggaagcaacacattgttagaagataggccagaggaactctgggtaacaaaat 319
Query: 543 aaggaaagagttgcagtatggagttcctgaagttttattgtgccaactatgcttggcagg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaggaaagagttgcagtatggagttcctgaagttttattgtgccaactatgcttggcagg 259
Query: 603 acatataaataaaagcattgactgatgtccttgatgtgtacatgcaaagattag 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acatataaataaaagcattgactgatgtccttgatgtgtacatgcaaagattag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_d04.g1 MSMg01no478_d04.g1 CHROMAT_FILE:
MSMg01no478_d04.g1 PHD_FILE: MSMg01no478_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:52 2005
(641 letters)
>mm_chr17_40565553_40566595
Length = 1043
Score = 520 bits (269), Expect = e-151
Identities = 546/675 (80%), Gaps = 74/675 (10%)
Strand = Plus / Plus
Query: 10 atattttaaagcaacaccaagagaaacagatccaatgtatttgacaaactcagcaagatt 69
|||||||||||||||||||||||||||||||| |||| |||||| |||| |||| ||||
Sbjct: 210 atattttaaagcaacaccaagagaaacagatctaatgcatttgagaaacacagccagatg 269
Query: 70 ttctggtacagaatgtttgtaaactaaattcaacaacaacagatca------aaaaataa 123
||||||||||||||||||| |||| ||||||||||||||||||||| ||||||
Sbjct: 270 ttctggtacagaatgtttgcaaaccaaattcaacaacaacagatcatttttaaaaaat-- 327
Query: 124 aaagtatagtataattcagt-ggtttcattccaaagaagcaagaatgtttcaacatgtca 182
|||||||||||| |||| |||||||||||||||||||||| |||||||| |||| |
Sbjct: 328 ---gtatagtataatccagttggtttcattccaaagaagcaagcttgtttcaatatgtaa 384
Query: 183 gaattaatggatgtaataagccgcaatag-tcagtgttaatgatcaacgtgacagaatcc 241
|||||||||||||||||||||| || | | ||||||||||||||| ||||||||||||
Sbjct: 385 gaattaatggatgtaataagcc---at-gat-agtgttaatgatcaatgtgacagaatcc 439
Query: 242 agaatt-atgcagat--tacgagcctttgggcatgcatgtgtaggattattttagctaca 298
||| || |||||||| | | |||| | ||||||| |||||| ||||||||||| ||||
Sbjct: 440 aga-ttcatgcagatgtt--gggcctctaggcatgcctgtgtaagattattttagataca 496
Query: 299 ttagttgatgtgggaagactcatattgattat---------------------------- 330
| | || | | ||||||||||||||||||||
Sbjct: 497 tcaattaacataggaagactcatattgattattggtaggactgttccatgggcatggaat 556
Query: 331 ----------ataaggtggagaaagcaaactgatcacaagcttgcatgtttgcctttgta 380
||||||| |||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 557 tacagactatataaggtagagaaaacaaactgatcacaatcttgcctgtttgcctttgta 616
Query: 381 caccccctgtttccacttagtggatgatttacatccagtattttgaagggttattttttt 440
||| || | ||| ||||||| ||| ||||||||||||||||| || || |||||
Sbjct: 617 tacctccaggttctacttagtatatgttttacatccagtatttttaa-----atgttttt 671
Query: 441 tctccttaagaaggtctgctttaaaatattttttaaaaaatgtaatcaggaaaccatgt- 499
|||||||||||||| | ||||||||||||||| |||| || |||||||||||||||||
Sbjct: 672 cctccttaagaaggtatactttaaaatattttt-aaaagatataatcaggaaaccatgtg 730
Query: 500 atatttctttgaacc-atgttgctgcaggctcttatgggcaaggaagctttgctgctttt 558
| ||||| ||| || ||| ||||||||||||||||||||||||||| |||||||| ||
Sbjct: 731 a-atttcaatga-cctatgctgctgcaggctcttatgggcaaggaagttttgctgccttg 788
Query: 559 tagtattgatgagtccagactcataattgagaaagagaaatattgaaggcttctccaaca 618
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 789 --gtattgatgagtccagacttgtaattgagcaagagaaatattgaaggcttctccaaca 846
Query: 619 acctcttcctatcac 633
|||||||||| ||||
Sbjct: 847 acctcttcctctcac 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1043
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1033
Effective search space: 651823
Effective search space used: 651823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
