XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNCGNGGAANNCT
TTGTTCACTAAGACGTGAGCTTTGTACAAGAAACCTAGATTTTAAAGGAT
ACATGTAAAAAACATGCAAAATGTCTCTGCTAAACAAGAATAGAGCTTAG
CAACTGATCTAACCCAAGGCAGTGTGGGTAGGTAGACCAGGTAGGCGTGT
GTCATCTCTTTCTCTAATGAAGAAAACCTGGTTTATCACCTGTGCACAGA
AATGTCTTCTCTCTATTCCTAGGAAGGATGGTCTTCTTCATCATAACTGT
GGTAAACATTTTTTACCAGGGTCTTCTCAAAACTCTCACATATTACCAGG
ACTTGACAAAACATATATTTTCTTTCGTCCCTCACAGCTCTTCTTACATC
CTTTCCTCTTCTGGTGAAGAATATATATTAAGAAATATAATCAAGCTAGT
CATGTGGCTAGATACCAGTAATCCCAAAACTCAGGAACAGTAGAAGTTCA
AGGTTAGCCTGGACCCTGTACAGGTCTACATTCCCATCTCAGAGTGGCTT
GGCCTGGGATAACTGCAGTTTAGAGCTTTTAAAATTGAGTGCCTCAGATA
TATGTGCATCCATACGCTGAATTCTGCTGCTCACACACGGTATGTTTGAA
GACAACTTAGAGCCACTTCTAGAAAATATTTGCTGCTTTTTCTTTGTTTT
GTTTGATATGGTTTTCTACTCTGT

NGGGTAGGCCAGGAANNCNCCGGTCATCATGGGGGANGNGAANNANANAT
TTCTANCAGGAAGGCNNNGNNNANCNCNGANNCCCATTTNNAAGGNNGNN
ANTTGANCCCCNGGAGNCCACCTTCNAGAANNCNNNANANANANNGGGAA
ANANANATATATATATATATATATTGGTCCCTTAATCTGATTTAGGGATA
GGTAATCTANCTTTTCCAATNTGGGTTGGGGGGGTTGTTTTTTTTTTTGN
NNTGGGTCTTTTGGTTTACGGAGTTTGGGGTTTTTGANAAGANTANNNNN
NNNNNNNAACCTTTTTTTTTTTTTAAAAAACCAANNNCNNNNCCNNNAAA
AAAAAATTTTTNTTTTTTNCCCAAAAATTTTTAAAGAATTTTCCCCAACT
TTTTCCCTCTTAAAAAATTTTCCATGGGCCCTGGGTTTTATTTGGAAAAT
TCCCTTGGACCCCATTTTAATTTTTTCCTTTTTTTACCACGGAAAAAANA
AAAAGGAAAAAATTTTGTTTTTTTTTAAAAAAAAAAAAATTCTACAATTT
GCCCACAAAAAATTTTTTTTATAAAAAAAGCGGGTTTTTTTTTCCAAAAG
AAGTTTTTATTTTTCTTTTTTTAAAAAAAAAAAAAAAAAAAATAAGGGGG
GGGGCTTATTTAGGGCCCCCACAAATATTTTAAAAACATACTTTTTTTTT
TTTTTTTTTAAAACAACAAAAAAAGATTTTTAAAAAATTTTTTTTTTAAA
AAATTTTTTTAAAACAAAAGGGGTTTTCTTAACAAAAAATTTTTTTATCC
CCTCATTTTTTTTTTTTTTGGGGAGGTGGGGGGG

Query= MSMg01no478_n12.b1 MSMg01no478_n12.b1 CHROMAT_FILE:
MSMg01no478_n12.b1 PHD_FILE: MSMg01no478_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:39 2005
         (659 letters)



>mm_chr17_55309988_55311046
          Length = 1059

 Score = 1228 bits (635), Expect = 0.0
 Identities = 653/659 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagctttgtacaagaaacctagattttaaaggatacatgtaaaaaacatgcaaaatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tgagctttgtacaagaaacctagattttaaaggatacatgtaaaaaaaatgcaaaatgtc 260

                                                                       
Query: 61  tctgctaaacaagaatagagcttagcaactgatctaacccaaggcagtgtgggtaggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgctaaacaagaatagagcttagcaactgatctaacccaaggcagtgtgggtaggtag 320

                                                                       
Query: 121 accaggtaggcgtgtgtcatctctttctctaatgaagaaaacctggtttatcacctgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaggtaggcgtgtgtcatctctttctctaatgaagaaaacctggtttatcacctgtgc 380

                                                                       
Query: 181 acagaaatgtcttctctctattcctaggaaggatggtcttcttcatcataactgtggtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagaaatgtcttctctctattcctaggaaggatggtcttcttcatcataactgtggtaa 440

                                                                       
Query: 241 acattttttaccagggtcttctcaaaactctcacatattaccaggacttgacaaaacata 300
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagcctttaccagggtcttctcaaaactctcacatattaccaggacttgacaaaacata 500

                                                                       
Query: 301 tattttctttcgtccctcacagctcttcttacatcctttcctcttctggtgaagaatata 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattttctttcgtccttcacagctcttcttacatcctttcctcttctggtgaagaatata 560

                                                                       
Query: 361 tattaagaaatataatcaagctagtcatgtggctagataccagtaatcccaaaactcagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattaagaaatataatcaagctagtcatgtggctagataccagtaatcccaaaactcagg 620

                                                                       
Query: 421 aacagtagaagttcaaggttagcctggaccctgtacaggtctacattcccatctcagagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacagtagaagttcaaggttagcctggaccctgtacaggtctacattcccatctcagagt 680

                                                                       
Query: 481 ggcttggcctgggataactgcagtttagagcttttaaaattgagtgcctcagatatatgt 540
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 ggcttggcctgggataactgcagtttagagctttcaaaattgagtgcctcagatatatgt 740

                                                                       
Query: 541 gcatccatacgctgaattctgctgctcacacacggtatgtttgaagacaacttagagcca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcatccatacgctgaattctgctgctcacacacggtatgtttgaagacaacttagagcca 800

                                                                      
Query: 601 cttctagaaaatatttgctgctttttctttgttttgtttgatatggttttctactctgt 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttctagaaaatatttgctgctttttctttgttttgtttgatatggttttctactctgt 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)