BAC Information

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BAC

Clone NameMSMg01-478N17
Chromosome17 (Build37)
Map Location 21,052,143 - 21,052,802
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4
Downstream geneLOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478N17.T7 (MSMg01no478_n17.b1)MSMg01-478N17.TJ (MSMg01no478_n17.g1)
ACCAG559874AG559875
length749758
length of high quality
(start - end)		329 (315 - 643)660 (65 - 724)
definitionCHROMAT_FILE: MSMg01no478_n17.b1 PHD_FILE: MSMg01no478_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:40 2005CHROMAT_FILE: MSMg01no478_n17.g1 PHD_FILE: MSMg01no478_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGGCGCTAAANGAATCACTATTCCAAAACGAGGCGCGGAATTCTTAGAT
TTCATAAAGAGGTTTTGAGTAGCCTTAGTATTATATGTCTTTTTTTTTCT
ACTTCTCAATCACAAGGAGAAATCACTTAGAAATGTTTCCTATAAAAATG
TATACATCACTAGGTCTTAGGAACAAAAGAACAATCAGTGTGCACAAACC
TATGCATGCATGCAGAAGCCTGACCATCGTCAATAACCATCTAACTATGC
TGTTGATACTTATTCAATGACATTGCTTGTTATTAGTTCTGAAGCTTACT
CAGTGTGACTTTATGTTGAAAATGTAAGAATCTGTTCTTCAGCTTTTGTG
ATTGATTGGCAAATTGCTAGGGCCAGTATCGCCTGAGAGAGTCCATGAAC
CAATAGCCCTCTAGTCCTCACCCTGTGGGAGCTACTTTCTTTAGGGAACA
TGGAGTCCAGGGGAGGAGATGGGGTCAGCAAGACAACTGTGTTGAGTGGG
GTAGAAATCATTCATATTGCGTCTCTGCTGGGAAGAGGAGAAATTCAGAA
GAGGGAGAAGGCTTGGGGTTGAGGAAGAATTGTAAAGTACTTAGAGAAGG
TAAGAAGGTAAGAATTGGGTGTGGAAAATGGAAACTGGAGACAGATGAGG
GACCACCACACAGCAAACTGGGAGGGACAAAACACAAAGGTACCTGGGCC
CTGCCTGCTGCTGTGTCTCTGGAATTTCTCCCTGTGCCTCATTTCTGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGTGGAATTTCTTTTTATCTCCTATCACAATAAAG
CAGAATAAAAATTTTTGAATGGTTGCTTAAAGGTGATTGGTAAGAAAGAG
GGAGACTTTGTAGAATAAACAACAAAGAGAAATGGCTAGATATTTAAAAA
AACCCAAGACATAAATATTCATGCCATACATATAATGAACTAATTATGAC
ACTCTTTTAAATTGTGTCCTGAGTCTTTGTGATAATTTATGGTTTTTGCA
TATTCATTCTTATTATTAAAATATGAAAGGAATATGCAGCATTTTACAGA
AAGAAGTTAGAAACACAGCATGTATTAGACCTTCTTAAATTCCATCTACT
TGGAGTAGACTCAAAAGGAAATGCATGATGTATACTCACATATAAGTAGA
TATTAGCCATAAAGTACAGGATTACCATGCTACAAACCACAGATCCAAAG
AAGTCCAATAACAAGTAAGGTCCAAGGAACAATGTTTTACTCTCCCTCAG
AAGGGGAAATAAAACAGATATCAGAAGTCAAGGAGGGATGGAACCAGGTA
GGTGAAGTGAACAGAGCAGGGAGATCACATGTAGGGATGGAGGGGAGAGA
ACAGAAATCAGTGGCAGGCAGGAGAAGCTCTAGGATGGTGCCATCTCCAA
GTCTACGGAGGGAACTCTAACTGAAACTGCTAGTGGTGAGAGATATGGAC
TTTGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_n17.g1 MSMg01no478_n17.g1 CHROMAT_FILE:
MSMg01no478_n17.g1 PHD_FILE: MSMg01no478_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:40 2005
         (660 letters)



>mm_chr17_21051943_21053002
          Length = 1060

 Score = 1237 bits (640), Expect = 0.0
 Identities = 655/660 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtggaatttctttttatctcctatcacaataaagcagaataaaaatttttgaatggtt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtggaatttctttttatatcctatcacaataaagcagaataaaaatttttgaatggtt 260

                                                                       
Query: 61  gcttaaaggtgattggtaagaaagagggagactttgtagaataaacaacaaagagaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttaaaggtgattggtaagaaagagggagactttgtagaataaacaacaaagagaaatg 320

                                                                       
Query: 121 gctagatatttaaaaaaacccaagacataaatattcatgccatacatataatgaactaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctagatatttaaaaaaacccaagacataaatattcatgccatacatataatgaactaat 380

                                                                       
Query: 181 tatgacactcttttaaattgtgtcctgagtctttgtgataatttatggtttttgcatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgacactcttttaaattgtgtcctgagtctttgtgataatttatggtttttgcatatt 440

                                                                       
Query: 241 cattcttattattaaaatatgaaaggaatatgcagcattttacagaaagaagttagaaac 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattcatattattaaaatatgaaaggaatatgcagcattttacagaaagaagttagaaac 500

                                                                       
Query: 301 acagcatgtattagaccttcttaaattccatctacttggagtagactcaaaaggaaatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagcatgtattagaccttcttaaattccatctacttggagtagactcaaaaggaaatgc 560

                                                                       
Query: 361 atgatgtatactcacatataagtagatattagccataaagtacaggattaccatgctaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgatgtatactcacatataagtagatattagccataaagtacaggattaccatgctaca 620

                                                                       
Query: 421 aaccacagatccaaagaagtccaataacaagtaaggtccaaggaacaatgttttactctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaccacagatccaaagaagtccaataacaagtaaggtccaaggaacaatgttttactctc 680

                                                                       
Query: 481 cctcagaaggggaaataaaacagatatcagaagtcaaggagggatggaaccaggtaggtg 540
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctcagaaggagaaataaaacagatatcagaagtcaaggagggatggaaccaggtaggtg 740

                                                                       
Query: 541 aagtgaacagagcagggagatcacatgtagggatggaggggagagaacagaaatcagtgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagtgaacagagcagggagatcacatgtagggatggaggggagagaacagaaatcagtgg 800

                                                                       
Query: 601 caggcaggagaagctctaggatggtgccatctccaagtctacggagggaactctaactga 660
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 801 caggcaggagaagctctaggatggtgccatctccaagtctacagagggaactctagctga 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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