NGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTCTTGCGGAGAAATGGAAGACAGTTGAAAGCAGGTCTTGA
ATTCCTGACCCTCTGGCCTCTACACACCAAGAGCTGAAAGTATGACCATA
TGCCAACACACCTGGCTCGGATTTTGATCCTTAACATTTAATTATGCTAA
AATCCTCTATAGCATTTTAATAATCATTATTTTCTGCTCACCACAAATTG
TAGTTCTAAGTTGCTGTTGGAGTCAGTTTTGCTGCTTTCAGGAGTTACAT
TCTAACATTTTTAAAGAACTTTATATTTTGGGGAGTCACTCTAAGAGTTT
GTCTGGCACAGAGACATTCTAAGCATTTGGTAATCACAGCAGCATGTTTT
ATTTTGCTGTTTGTCTTCACACTGCCATACCTACAACTTTCATAGTATTG
GAAGAGATGGGGAAATCTAATGATCCCCACGAAACAGGTTTTTTTTTTTT
GATTGCTCTTTTTTTTAATTTAATTTTATTTTTATTAGGTATTTTCCTCG
TTTACATTTTCAATGCTATCCCAAAAGTCCGCCATACTCACCCCCCCCAA
TCCACTACCCACCCACTCCCCCGTTTTGGCCCTGGGGTTCCCCTGTACTG
GGGCATATACTGTTTGCAAGTCCAATAGGCCTCTCTTTGCAGTGATGGCC
GACTAGGCCATCTTTTGAACATAGGCAGCCAGAGTCAAGACTCCGGGG

NCCAAATAAGTXXXXXXXXXXXXXXXXXXXXXXATCAGACCCAAGGTGAA
CTATAGAAGGTCCAAAAAAACATCTTAAGATTTATTTTATTATTTTAAAA
ATTAAGTGTGTGTGTGTCCCTATGTGTGTGTGTGTGTGTGTGTCTCCCCC
TTCCTTTCCCCCTTTCCCTTCCCTCTTCCCTTTCCCTCCTCTCCCCTCCC
CCTTTCCCCTCTCCCCTTTTCCCTTCCCCCCCCCCCTCTTTCTTCTCTCC
TCCCCCCCATTTCCCCCCCCCCCCTTCTTCCCGCCCCTCCCCCCCCCCCC
TTCCCTAGTTTCCNGCCCCCCCCCCCCCCCCCCGNGCCCCCTCCTTCCCC
CCCCCCCTCCCGCCCCTCCTCCCTTTCCCCCACCCTCTCTTTCCCCCCCT
TCCCCCCCAATACTATAACAACAAATATCAAAACACCCACCAACAATCCA
CCCCCCCCCTAACACCCCAACCCCCAAACCAACCATTCCCACTAAACCCC
CCAACACCACACACCAAAACCAACCATAAACCCCCAAACCACCCACCAAC
ACTCCAAAACCCAAAACCCCCCACCACCAACCCCAAAACCAAACAAACCA
ACACCCAACCACCAACACTACAAACACCCCCACTATCCCCAACCCCTTCC
ACACACAATAATAACAAACACCCCTCCCCCACCACACAAAACCACAAACC
CCCAACAATCCAAAACAAAAACACCCCCACCCCCCCAAAAAAACCCCACC
ACAACACCCCCCACAAACCCCCACCGACATACCCCCAACACCCACCAACA
CCCCCCCN

Query= MSMg01no479_k05.b1 MSMg01no479_k05.b1 CHROMAT_FILE:
MSMg01no479_k05.b1 PHD_FILE: MSMg01no479_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:42 2005
         (600 letters)



>mm_chr17_11484865_11485863
          Length = 999

 Score = 1015 bits (525), Expect = 0.0
 Identities = 583/603 (96%), Gaps = 4/603 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttgcggagaaatggaagacagttgaaagcaggtcttgaattcctgaccctctggcct 60
           |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ctcttgtggggaaatggaagacagttgaa-gcaggtcttgaattcctgaccctctggcct 259

                                                                       
Query: 61  ctacacaccaagagctgaaagtatgaccatatgccaacacacctggctcggattttgatc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 ctacacaccaagagctgagagtatgaccatatgccaacacacctggctcagattttgatc 319

                                                                       
Query: 121 cttaacatttaattatgctaaaatcctctatagcattttaataatcattattttctgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttaacatttaattatgctaaaatcctctatagcattttaataatcattattttctgctc 379

                                                                       
Query: 181 accacaaattgtagttctaagttgctgttggagtcagttttgctgctttcaggagttaca 240
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 380 accacaaattgtagttctaagttgctattgaagtcagttttgctgctttcaggagttaca 439

                                                                       
Query: 241 ttctaacatttttaaagaactttatattttggggagtcactctaagagtttgtctggcac 300
           |||||||||||||||||||||  | |  ||||||||||||||||||| ||||||||||||
Sbjct: 440 ttctaacatttttaaagaactaaagaacttggggagtcactctaagattttgtctggcac 499

                                                                       
Query: 301 agagacattctaagcatttggtaatcacagcagcatgttttattttgctgtttgtcttca 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 agagacattctaagcatttggtaatcatagcagcatgttttattttgctgtttgtcttca 559

                                                                       
Query: 361 cactgccatacctacaactttcatagtattggaagagatggggaaatctaatgatcccca 420
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 560 tactgccatacctacaactttcatagtattggaagatatggggaaatctaatgatcccca 619

                                                                       
Query: 421 cgaaacaggtttttttttttt-gattgctctttttttt--aatttaattttatttttatt 477
           ||||||||||||||||||||| ||||||||||||||||  ||||| ||||||||||||||
Sbjct: 620 cgaaacaggtttttttttttttgattgctcttttttttttaattttattttatttttatt 679

                                                                       
Query: 478 aggtattttcctcgtttacattttcaatgctatcccaaaagtccgccatactcacccccc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggtattttcctcgtttacattttcaatgctatcccaaaagtccgccatactcacccccc 739

                                                                       
Query: 538 ccaatccactacccacccactcccccgttttggccctggggttcccctgtactggggcat 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccaatccactacccacccactcccccgttttggccctggggttcccctgtactggggcat 799

              
Query: 598 ata 600
           |||
Sbjct: 800 ata 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 999
Length adjustment: 10
Effective length of query: 590
Effective length of database: 989
Effective search space:   583510
Effective search space used:   583510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)