BAC Information

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BAC

Clone NameMSMg01-480D07
Chromosome17 (Build37)
Map Location 58,972,367 - 58,972,908
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5c, LOC674419, LOC620408, EG545216, LOC668648
Downstream gene2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480D07.T7 (MSMg01no480_d07.b1)MSMg01-480D07.TJ (MSMg01no480_d07.g1)
ACCAG560902AG560903
length729732
length of high quality
(start - end)
600 (48 - 647)655 (78 - 732)
definitionCHROMAT_FILE: MSMg01no480_d07.b1 PHD_FILE: MSMg01no480_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:26 2005CHROMAT_FILE: MSMg01no480_d07.g1 PHD_FILE: MSMg01no480_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCTTGGTCTTGCTGGGTTCTGCAGACTTTGGATACCTGGGTTTGCA
ACACTGGCTGCCCCCTGTATCCTCTGACTAAAGAAAGTGGAGAATTTAAA
TGAACATCAGAACATCAGAAAGCATTTGAGGATATTAAGGAGGCCCTGTT
GACTGTGCTGGCCTTGGCACTGCCAGATTTAACCAAGCCCTTCACCCTTT
AGGTTGATGAAAGGGTGGGAGTGGCCAGAGGGTTATTACTCAGACTCTGG
GGCCTTGGAAGAGGCCTGTGGCACATCTGTCTAAAAAGCTGGACCCAGTG
GCCAGCACATGGCCCACATGTCTGAAGGCCATTGCTGCGGTAATCTTGCT
TGTTAAGGCTGCCAACAAGTTAACTTTGGGACAACAAATAACTGTGGTGG
CCCCCCACTCTCTTGAAAGCATTATCCGCCAGCCCCCAGACCGATGGATG
ACCCATGCCCAAATGACTCACTATCAGAGTCTGTTGCTGACTGAGCAGAT
AACATTTGCTCCTCCTGCTATCCTCAATCCTGCTACCCTCCTACCTGAGA
CACAAGACTCGTTGCCCGTCCACTGCTGCACTGATATCCTTGTGGAAGAA
ACAGGGGTCCGGAGTGATCTGCATGATCAGCCATGGNCAGGCGTTCCAAA
CTGGTATACAGCAGCTTTTTGCTGGAGGG
NGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATCTTAAAAGGCACTTATAATA
GGGTAATACTAAAAGAGAGCACATGGATCCATACACTAGACTAACGTGGG
AATGGAAAATTAATGTATGGGTTAGAGAGCACATACTGTGCTGGATTCTG
CTGGCAATGAAGGACAAATGAACAAAAATTCACAATTGAAAGTACAATGA
CTAAAGGGCACATACCATTTTTGCACCATAACGTGGGTGAGGATTTGTAA
GTCGAACCCTATTAAGTTGGTTTTTGTATGGATGCAAATCCAATACTTCA
TTTATCTCTGGAGCCACATAGTAATAAATTATTGCTATACAGACATTTGC
TAGATTATTTCAGGGTTCTGTTCTAAGAAGCACAATCTGAACACCCTCTT
CCCTTTATCCCTCATCTCAAGACCTCTCAAGAGTTAAGCTCAAGTGAGAG
AGTGAGGGAGAAGCACACAAAACTTTGCCCCTGAGTCCAGAGTACAGAGA
CAGACAGAGTCTTCACAAGGAAAGCAGAGATAGACAATTTACTGTACATA
CTCAGGTAAGCTTCAGACTGAGCAGATCTCATGTTCTTTTACAGCAGGAG
GACAGAGTCAAGAGAGCCAGAACAGGAGACAAGGAATTCTTGCCATGTAA
GTGCAGAACCAAAGAAGAGAGAGAGGAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_d07.g1 MSMg01no480_d07.g1 CHROMAT_FILE:
MSMg01no480_d07.g1 PHD_FILE: MSMg01no480_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:26 2005
         (655 letters)



>mm_chr17_58971921_58972975
          Length = 1055

 Score =  924 bits (478), Expect = 0.0
 Identities = 526/542 (97%)
 Strand = Plus / Minus

                                                                       
Query: 114 ctggattctgctggcaatgaaggacaaatgaacaaaaattcacaattgaaagtacaatga 173
           ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 988 ctggattctgctggcaacgaaggacaaatgaacaaaaattcacaattgaaggtacaatga 929

                                                                       
Query: 174 ctaaagggcacataccatttttgcaccataacgtgggtgaggatttgtaagtcgaaccct 233
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 928 ctaaagggcacataccatttttgcaccataacatgggtgaggatttgtaagtcgaaccct 869

                                                                       
Query: 234 attaagttggtttttgtatggatgcaaatccaatacttcatttatctctggagccacata 293
           ||||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 868 attaagttgggaattgtatggatgcaaatccaatccttcatttatctctggagccacata 809

                                                                       
Query: 294 gtaataaattattgctatacagacatttgctagattatttcagggttctgttctaagaag 353
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 808 gtaataaattattgctatacagacatttgctggattatttcagggttctgttctaagaag 749

                                                                       
Query: 354 cacaatctgaacaccctcttccctttatccctcatctcaagacctctcaagagttaagct 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cacaatctgaacaccctcttccctttatccctcatctcaagacctctcaagagttaagct 689

                                                                       
Query: 414 caagtgagagagtgagggagaagcacacaaaactttgcccctgagtccagagtacagaga 473
           |||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||
Sbjct: 688 caagtgagagagtgagggagaagcacacaaaacttcacccctgagtccagagtccagaga 629

                                                                       
Query: 474 cagacagagtcttcacaaggaaagcagagatagacaatttactgtacatactcaggtaag 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 628 cagacagagtcttcacaaggaaagcagagatagacaatttactgtacatactcaggtcag 569

                                                                       
Query: 534 cttcagactgagcagatctcatgttcttttacagcaggaggacagagtcaagagagccag 593
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 568 cttcagactgagcagatctcatgttcttttacagcagcaggacagagtcaagagagccag 509

                                                                       
Query: 594 aacaggagacaaggaattcttgccatgtaagtgcagaaccaaagaagagagagaggaaaa 653
            |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 508 cacaggagacaaggaattcttgccacgtaagagcagaaccaaagaagagagagaggaaaa 449

             
Query: 654 aa 655
           ||
Sbjct: 448 aa 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)