BAC Information

Click to search

BAC

Clone NameMSMg01-480H24
Chromosome17 (Build37)
Map Location 60,673,139 - 60,673,355
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043542, LOC100043549
Downstream geneLOC433129, EG620725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480H24.T7 (MSMg01no480_h24.b1)MSMg01-480H24.TJ (MSMg01no480_h24.g1)
ACCAG561126AG561127
length584692
length of high quality
(start - end)		225 (54 - 278)249 (76 - 324)
definitionCHROMAT_FILE: MSMg01no480_h24.b1 PHD_FILE: MSMg01no480_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:49 2005CHROMAT_FILE: MSMg01no480_h24.g1 PHD_FILE: MSMg01no480_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGCCATTATACTTAAATGACATGTTTTCAAATAACTA
AAATTTCTTGAAATGTAGGATCAGGAAATTTTCACAGCATACTAGAGGCA
TATGTAGAATTTACTTAAATTCTCCACTCACAATTTTGTTTTCATACCTA
AATTGAAAAGATAATATGTTTTGTTTTTCCCTCTAGACAAGCTAGTAGTG
AAAGTATNGAAATCACTGTGCCCATCAGATAGCCTGAGATACTACATTTT
TAGATGGTAATGGCATTTTCTTAAGTTTAACTTTAAGGTGGAATTTTAGG
GAAGAAAAAAAATCCCCTTTAGCAAAAATCAAGAAGGGCCTTTCCCCTTT
TACAATTTTCCCCGGGGAAAAAAAAAAAAAAAAAAAAAACCCCCCCCCGG
GGGGCCCAAAAGGGAACCCAACAAAATTTTTTGTTGTTCCCCACCCGGGG
AAAAGGGTTTTTCTTTCTTTAAAAAAAAAGGGGGGGGGGGCCCCCCCCCC
CGGGGAGAAAAAATTGGTTGTTTTTTTTTTATGT

AAAACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCAGAAATTCTTTGTTTCGCTCTGTACTCCAT
TTTTAATAGGATTATTTGGTTTTCTGGAGTCTAACACTTTGAGTTGTTTG
TATATATTGGTAAAAATCTTTTCTTAATTTGTTGGTTGCCTTTTTGTCTT
ATTGACAGTGTCCTTTGCCTTTCAGAAACTTTGCAATTTTATGAGGTCCC
ATTTGTTAATTCTTAAGCCAGACACTATAGTGGATGCCAACAAGAGCTTG
CTTACAGGAGCCTGATATAGCTGTCTTCTGAGAGGCTTTGCCAGTGCCTG
ACAAATACAGAAGTGATGCTCACAGCCATCCATTGAACAAATCACAGTTA
CCCCAATGAATGAGCTACAGAAAGGACCCAAGGAGCTGAAGGATTTCACA
GCCTCATAGGATTAACACAATATGAACTAACCAATACCCTCCAGATCTCC
CTGGGTTCACCCACCAATCAAAGAAAACACATGTTGGGACTCATAGCTTC
TACTTGCATATGGACCAAAGGATGGCTAAACCGGTCATCAATGGGAAAGA
AAAGCCCCAGGGTTTCTGGGGGTTTATTTGGCCCCCAATAAGGGGAACTG
CCCCGGTCCCCGAAAAAGGGGTTGGGGAAAAAGGGGGGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_h24.b1 MSMg01no480_h24.b1 CHROMAT_FILE:
MSMg01no480_h24.b1 PHD_FILE: MSMg01no480_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:49 2005
         (225 letters)



>mm_chr17_60672935_60673555
          Length = 621

 Score =  327 bits (169), Expect = 4e-94
 Identities = 207/221 (93%), Gaps = 4/221 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagccattatacttaaatgacatgttttcaaataactaaaatttcttgaaatgta 64
           |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 421 gaattcagccattaaagttaaatgacatgttttcaaataactagaatttcttgaaatgta 362

                                                                       
Query: 65  ggatcaggaaattttcacagcatactagaggcatatgtagaatttacttaaattctccac 124
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 361 ggatcaggaaattttcacagcatagtagaggcatacgtagaatttacttaaattctccac 302

                                                                       
Query: 125 tcacaattttgttttcatacctaaattgaaaagataatatgttttgtttttccctctaga 184
           | |||||||| ||||||||||||||||||||||| ||| ||||||   ||||||||||||
Sbjct: 301 ttacaattttattttcatacctaaattgaaaagaaaatctgtttt---tttccctctaga 245

                                                    
Query: 185 caagctagtagtgaaagtatngaaatcactgtgcccatcag 225
           |||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 244 caagctagtagtgaaagtat-gaagtcactgtgcccatcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 621
Length adjustment: 9
Effective length of query: 216
Effective length of database: 612
Effective search space:   132192
Effective search space used:   132192
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |