BAC Information

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BAC

Clone NameMSMg01-480J10
Chromosome17 (Build37)
Map Location 88,895,770 - 88,896,289
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058, Foxn2
Downstream geneCcdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480J10.T7 (MSMg01no480_j10.b1)MSMg01-480J10.TJ (MSMg01no480_j10.g1)
ACCAG561194AG561195
length731728
length of high quality
(start - end)
487 (112 - 598)523 (76 - 598)
definitionCHROMAT_FILE: MSMg01no480_j10.b1 PHD_FILE: MSMg01no480_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:56 2005CHROMAT_FILE: MSMg01no480_j10.g1 PHD_FILE: MSMg01no480_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCAATXXXXXXXXXXXXXXXXXXXXXXXCTATGTCCTGAGCTCCGCG
GAATTCACACACACATACANAAAAAAGGGGNNNNNNNNACNCNCACNCAC
NCAGACACAANTGCAAAATGCACCCAAAAGGAAAACTGAAACCATACACC
TCACACAATAGGTAACCATTAGAAAATGGGCACAGGGTGGCTGGAAAAAT
GGCCCAGCAGTTAGCTTTCAGAAGTCGTGAGTTCGGTTCCAGGCAGCCAC
ACTTATTGGCTCAGAACAAAGGGTCAAGAGCTCCAGCTTCAAGGGCTCAG
ATGTCCCCTTCTGGCTTTAAATGCTGCTGCACATATTTGGTGTTCACACA
CATCACACATAAATAAAAATATTAAAAATAAATTCTCAGGGCATCATCGT
GAGTGAGGTAACCCAATCACAAAAGAACTCACATGATAAGCATTCACTGA
TAAGTGGATATTAGCCCAGAAACATAGAACACCCAAGATACAATTTCCAA
AACACATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGATACTTTGCTC
CTTCTTAGAAGGGGGAACAAAATACCCATGGAAAGAGGTACAGAGACCAA
GTTTGGAGCTGAGACGAAAGGATGGACCATCCATAGAGTGCCCTACCTGG
TTGTTCTTTCCTTAAACCTTCACGAAACGCAAACACTATTGCATAATCCC
ACTAAAATTTTGCTTGAAGGACCCTTGATTA
NTCCATGCAGTGGGTAGCTGGNGGCGNCTGGCTTTCAAAAAAGGTGAACT
ATAGAAGGATTCAAAAAATAGGGCACAGAAAAGATGTGGATATGCATCTG
AGTAAGAATTTTCATCAGCCCAGTGCATAGACCACTGATTGGTACCTCAT
TACTGGTAACGATAGCAGGCAAAGAGGCCTTTCCAATCTCTAAACACAAC
GTTTAGTTTAGAAAATTCCAAATAAAGGAGAATAATGTTCTTTCAGTTAT
TAAGATAACACCATTTTAAAAATAGCCACAAATAAGCCAAGTTTGTGACA
AACTATTTTGGTTGTTAANATTAATAAATCCCCTGGATTTCCCAAGGTTT
TGTTATAAGAAATGAATATTTTAATTATATTAAACAAAAGTCTCTGGGGA
AGATGGAAATCTATAGAGAACTCTGAGGCCTGTGGCTCAGAAACAGAAAA
TCAAATGACGTCTTTCTTTTTACTTCCCCTATCCCTAGGAAAGAGCCCAA
AAAGGGAAGAGAAAAGCCTGTTCCATTGGCTTGATGAAAGCAGGCATTAA
CGAACACAGGGAAACTCGTGTAGCTGTGGTTACCTACCTAGGTAGGCATT
CATTTAGTTCTTTACCTACCCATCCCTTTGCCAGCCTACCAACCTACCTA
TCAACCTACCTACTTATCTACCTACCAACCTACCTATCAACCTACTTATC
TACCTACCAACCTACCAACCTGGCTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_j10.g1 MSMg01no480_j10.g1 CHROMAT_FILE:
MSMg01no480_j10.g1 PHD_FILE: MSMg01no480_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:56 2005
         (523 letters)



>mm_chr17_88895570_88896492
          Length = 923

 Score =  953 bits (493), Expect = 0.0
 Identities = 513/520 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaaagatgtggatatgcatctgagtaagaattttcatcagcccagtgcatagaccac 60
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 720 cagaaaagatgtggatatgcatctgagtaagaattttcatcagttcagtgcatagaccac 661

                                                                       
Query: 61  tgattggtacctcattactggtaacgatagcaggcaaagaggcctttccaatctctaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tgattggtacctcattactggtaacgatagcaggcaaagaggcctttccaatctctaaac 601

                                                                       
Query: 121 acaacgtttagtttagaaaattccaaataaaggagaataatgttctttcagttattaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 acaacgtttagtttagaaaattccaaataaaggagaataatgttctttcagttattaaga 541

                                                                       
Query: 181 taacaccattttaaaaatagccacaaataagccaagtttgtgacaaactattttggttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 taacaccattttaaaaatagccacaaataagccaagtttgtgacaaactattttggttgt 481

                                                                       
Query: 241 taanattaataaatcccctggatttcccaaggttttgttataagaaatgaatattttaat 300
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gaatattaataaatcccctggatttcccaaggttttgttataagaaatgaatattttaat 421

                                                                       
Query: 301 tatattaaacaaaagtctctggggaagatggaaatctatagagaactctgaggcctgtgg 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 420 tatattaaacaaaagtctctggggaagatggaaatccatagagaactctgaggcctgtgg 361

                                                                       
Query: 361 ctcagaaacagaaaatcaaatgacgtctttctttttacttcccctatccctaggaaagag 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctcagaaacagaaaatcaaatgatgtctttctttttacttcccctatccctaggaaagag 301

                                                                       
Query: 421 cccaaaaagggaagagaaaagcctgttccattggcttgatgaaagcaggcattaacgaac 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 300 cccaaaaagggaagagaaaagcttgttccattggcttgatgaaagcaggcattaacgaac 241

                                                   
Query: 481 acagggaaactcgtgtagctgtggttacctacctaggtag 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 acagggaaactcgtgtagctgtggttacctacctaggtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)