Query= MSMg01no480_k14.b1 MSMg01no480_k14.b1 CHROMAT_FILE:
MSMg01no480_k14.b1 PHD_FILE: MSMg01no480_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:02 2005
(620 letters)
>mm_chr17_36943966_36944988
Length = 1023
Score = 775 bits (401), Expect = 0.0
Identities = 521/623 (83%), Gaps = 95/623 (15%)
Strand = Plus / Plus
Query: 1 cttattttgtgtttgtatcacagtaagccaagatttttaagctttactaaaaacaaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttattttgtgtttgtatcacagtaagccaagatttttaagctttactaaaaacaaaaca 260
Query: 61 aaaaaa---aaacaaacaaaaagactttatctatttatattcattaaaaatactaatagt 117
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaaacaaacaaacaaaaagactttatctatttatattcattaaaaatactaatagt 320
Query: 118 gattgtgatggtttgtatatccttggaccagggagtggcaccatttggaggtgtggcctt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattgtgatggtttgtatatccttggaccagggagtggcaccatttggaggtgtggcctt 380
Query: 178 gttggaataggtgtgacctggtcagaatgggtgtgtcactgtgggtgtgggcataagatc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttggaataggtgtgacctggtcagaatgggtgtgtcactgtgggtgtgggcataagatc 440
Query: 238 ctcaccctatttttctggaagtcagtcttccactagcagcctttggatgaagacgtagaa 297
||||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 441 ctcaccctagttgcctggaagtccgtcttccactagcagcctttggatgaagatgtagaa 500
Query: 298 ctctcagctctacctatgccatgcctgcctggatactgccatggtcccaccttgatgata 357
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ctctcagatctacctatgccatgcctgcctggatactgccatgctcccaccttgatgata 560
Query: 358 atggactgaacctctgaatctgtaagccagccccaattaaatgttgttttattaagactt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggactgaacctctgaatctgtaagccagccccaattaaatgttgttttattaagactt 620
Query: 418 gctgggtgggtgggtatgggggacttttggtatagcattggaaatgtaattgagctaaat 477
||
Sbjct: 621 gc---------------------------------------------------------- 622
Query: 478 acctaataaaaaatggaaaaaaaaaaagacttgccttggccgtggtgtctgttcacagca 537
||||||||||||||||||||||||||
Sbjct: 623 ----------------------------------cttggccgtggtgtctgttcacagca 648
Query: 538 gtaaaaccctaactaagacagtgatatattatttttaaatatcatacagttaatatattt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gtaaaaccctaactaagacagtgatatattatttttaaatatcatacagttaatatattt 708
Query: 598 agacttatttaaaatttatattg 620
|||||||||||||||||||||||
Sbjct: 709 agacttatttaaaatttatattg 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1023
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1013
Effective search space: 617930
Effective search space used: 617930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_k14.g1 MSMg01no480_k14.g1 CHROMAT_FILE:
MSMg01no480_k14.g1 PHD_FILE: MSMg01no480_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:02 2005
(195 letters)
>mm_chr17_37110511_37111105
Length = 595
Score = 339 bits (175), Expect = 9e-98
Identities = 190/199 (95%), Gaps = 8/199 (4%)
Strand = Plus / Minus
Query: 1 taagaccacccctgtaaccatcaggctctcattgtgccctttcagtttctggattctcat 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 395 taagaccacccctgtaaccatcaggccctcattgtgccctttcagtttctggattctcat 336
Query: 61 cagcaagtcttagagaaatttctaatttttgttttggaagtcaatgtcattattgtaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cagcaagtcttagagaaatttctaatttttgttttggaagtcaatgtcattattgtaata 276
Query: 121 gcata----tttttgtaagaaagcagtgtcagggcatggcagcacatgccttagatatcc 176
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gcataaggg----tgtaagaaagcagtgtcagggcatggcagcacatgccttagatatcc 220
Query: 177 cattgaaagggaaattctc 195
|||||||||||||||||||
Sbjct: 219 cattgaaagggaaattctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space: 109769
Effective search space used: 109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
